Ggra5609.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5609.t1
Unique NameGgra5609.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Homology
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A2V3IY91 (rRNA-processing protein EFG1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY91_9FLOR)

HSP 1 Score: 213 bits (541), Expect = 2.520e-66
Identity = 122/226 (53.98%), Postives = 162/226 (71.68%), Query Frame = 0
Query:    1 MASHKRFDNSDDDEK--------TTSGHDHQFQFKP--ELPTMKAVQRKNQKAASAASKRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQARRDLQYILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAAPENQTTADTDNAIAD--DFFLDCGSE 214
            MA+H RFD  ++ E         +T+        KP  E+     + +K Q   S+ SKRKSR +LPA Q+RS+ERYL    H+LPP  +K+KKQELEEWKRV AER+RR+R++KFE+RYK++KFFE RKV+R+L+SIAKKG+R ED++AKLQA +DL+YI  YPKDKKYIALFPS GHT+E+++ VEQMRAFIEGS  A E  T+  + + + D  DFFL+C  +
Sbjct:    1 MAAHIRFDVDEEAESKEVPSGPVSTAVPTKAMAAKPQSEVAVTNGIHKKAQTKLSSQSKRKSRLQLPAYQVRSLERYLNKMGHQLPPAALKQKKQELEEWKRVAAERKRRTREQKFESRYKQVKFFEARKVRRLLESIAKKGNRSEDEQAKLQAEKDLRYIESYPKDKKYIALFPSRGHTEESRRKVEQMRAFIEGSNDAVEKDTSPRSPSVLQDEDDFFLNCDEQ 226          
BLAST of Ggra5609.t1 vs. uniprot
Match: R7QC22 (rRNA-processing protein EFG1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC22_CHOCR)

HSP 1 Score: 137 bits (344), Expect = 1.040e-36
Identity = 87/215 (40.47%), Postives = 127/215 (59.07%), Query Frame = 0
Query:    1 MASHKRFDNSDDDEKTTSGHDHQFQFKPELPTMKAVQRKNQKAASAASKRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQARRDLQYILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAA-----PENQTTADTDNAI-ADDFFL 209
            M +H RFD++D+D    +G       K        + + ++ + S    R+ ++K   +QIRSIER L++K  E  P   + K+++L+E  R+R E +RR  +RK  ++Y+ IKFFE RK+QR LD I + GD+PED + + +  RD++YI  YPKDKKYI+LFPSGGHTDE++K VE MR  IEG         P      + D  +  D FFL
Sbjct:    1 MGAHTRFDDADEDGAPATGSQANANRKAHGKDH-GISKPSKASESQQRGRQRKTKSVRSQIRSIERLLRNKGSEFTPASKRAKEEQLKELARIRDEHDRREAERKTTSQYRMIKFFERRKLQRTLDKIVEHGDKPEDADKRKEILRDMRYINEYPKDKKYISLFPSGGHTDESRKRVEAMRLEIEGKAILQKSGDPSTPKADEGDKPLQGDSFFL 214          
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A7S2TRG6 (rRNA-processing protein EFG1 n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRG6_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 4.080e-12
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 0
Query:   60 QIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQ----RKFETRYKRIKFFECRKVQRILDS----IAK---KGDRPEDQEAKLQAR-----RDLQYILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIE 185
            +IR +ER L++K+  LP  V K K++ELE+ K+   E+++++ Q    +K   +Y+ +KF E +K +R L      +AK   K  +   +E  L+ +      DL+YI  +PKDKKY++L+PSGG T E    +E+MR  IE
Sbjct:    5 RIRDLERLLRNKKRPLPEDVRKAKEKELEQLKKEVGEKQKKNSQVEKEKKLAKKYRYLKFIEKQKTERKLSKARARLAKMFSKDGKETVEEKNLRKQIDQLVSDLEYIKNFPKDKKYVSLYPSGGSTPEHDARIEKMRKLIE 146          
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A7S0H0P3 (rRNA-processing protein EFG1 (Fragment) n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H0P3_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 2.080e-11
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 0
Query:   59 NQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRA----ERERRSRQRKFETRYKRIKFFECRKV--------QRILDSIAKKGDRPEDQEAKLQARR-----DLQYILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAAPENQ 194
            +++R + R L  K  +LP  V K K++ELEE K   A    ER++  + +K+  +YK +KF E +KV        +R+  + +K G   +D E KL+ R      DL+YI ++P ++KY++LFP+GG T E +  ++ +RA I  SG    N+
Sbjct:   26 SRLRDLTRLLAKKGSKLPEEVKKAKEKELEEVKIKLAQDEKERKKNDKAKKYAIKYKYVKFIEKQKVVRQMAKIRKRLAKTFSKDGQETQD-ETKLRERMQSLEADLEYITKFPCNRKYVSLFPTGGVTPEHQNRIDSIRAVIGQSGKDENNE 177          
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A2K1L4L2 (rRNA-processing protein EFG1 n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L4L2_PHYPA)

HSP 1 Score: 70.5 bits (171), Expect = 1.290e-10
Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 0
Query:   49 KRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKG----DRP-EDQEAKL--------QARRDLQYILRYPKDKKYIALFPSGGHTD-EAKKSV--EQMRAFIEGSGAA----PENQTTADTDNAIADDFFLDCGSESD 216
            K+KS+     NQIRSIER LK    ELPP V + + + LEE K           +RK   RY+R+KFFE RK++R +    K+     D P ED E +L        Q + DL+YI  +PK +KYI+L+      D +AK++   E+++A +  + AA     E  +  D  +   DDFF+  GS SD
Sbjct:   43 KKKSKLVSTKNQIRSIERLLKK---ELPPAVKEAQLKRLEELKLQSNAHATAELERKMALRYRRVKFFERRKIERRIRRFEKQQRALLDNPSEDNETQLTTLADQLHQLKEDLEYIRFFPKTEKYISLYMGMDDPDVKAKRNELRERIKANLLAAAAAGHELEETGSEDDVGDMSEDDFFM-AGSSSD 226          
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A6I9S182 (rRNA-processing protein EFG1 n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S182_ELAGV)

HSP 1 Score: 69.3 bits (168), Expect = 2.170e-10
Identity = 58/175 (33.14%), Postives = 102/175 (58.29%), Query Frame = 0
Query:   49 KRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQ--EAKL-----QARRDLQYILRYPKDKKYIALFPSGGH---TDEAKKSVEQMRAFIEGSGAA-PENQTTADTDNAI---ADDFFL 209
            ++K +S    NQIRS ER L+    +LP  + + ++++LEE K+ +  + R S +RK + R ++IKFFE RK++R++  + K+     D   E K+     + R DL+Y+  +PK +KY++LF  G +    D+  +  +Q++A +  + A+  E + TA  D+A+    DDFFL
Sbjct:   30 RKKHKSVSLKNQIRSAERLLRK---DLPAEIRQAQEKKLEELKKHQEIQSRLSIERKIQLRDRKIKFFERRKIERMIRRLEKQQRTSSDHTSEGKISDQLSKLREDLEYVRFFPKTEKYVSLFVGGDNPDIVDKRNRLRKQIKANLMAAAASGKELEETASDDDALDVSEDDFFL 201          
BLAST of Ggra5609.t1 vs. uniprot
Match: A0A804K8S2 (rRNA-processing protein EFG1 n=3 Tax=Musa TaxID=4640 RepID=A0A804K8S2_MUSAM)

HSP 1 Score: 69.3 bits (168), Expect = 2.170e-10
Identity = 63/184 (34.24%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   49 KRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKK---------GDRPEDQEAKLQARRDLQYILRYPKDKKYIALFPSGGH---TDEAKKSVEQMRA-FIEGSGAAPENQTTADTDNAI---ADDFFLDCGSESD 216
            ++KS+S    NQIRS ER L+    +LP  V + ++Q+L E K+ +  + R + + K   R ++IKFFE RK++R++  + K+          +R  DQ +KL  + DL Y+  +PK +KY++LF  G +    D+  K  +Q++A  I  +    + + TA  D+A+    DDFFL  GS SD
Sbjct:   30 RKKSKSVSVKNQIRSTERLLRK---DLPNEVRRAQEQKLNELKKQQELQTRLALEHKIRLRDRKIKFFERRKIERMIRRLEKQQRASSDHVSDERILDQLSKL--KEDLNYVRFFPKTEKYVSLFAGGDNPDTVDKRNKLRDQIKANLIAAAANGKDLEETASDDDALDVSEDDFFLS-GSSSD 207          
BLAST of Ggra5609.t1 vs. uniprot
Match: W1P3B2 (rRNA-processing protein EFG1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1P3B2_AMBTC)

HSP 1 Score: 68.9 bits (167), Expect = 3.360e-10
Identity = 62/173 (35.84%), Postives = 92/173 (53.18%), Query Frame = 0
Query:   59 NQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQA-------RRDLQYILRYPKDKKYIALFPSGGHTD---EAKKSVEQMRAFIEGSGAAPEN--QTTADTDNAI---ADDFFLDCGSESD 216
            NQIRSIER L  K   LP  V   ++  LEE K+ +    R + +RK   RY+RIKFFE RK++R +  + K      D  ++ Q        R DL+Y+  +PK +KY++LF  G   D      +  EQ++A +  + A+ ++  +T +D D  +    DDFFL  GS SD
Sbjct:   45 NQIRSIERMLLRKN--LPHEVKNAQEARLEELKKQKEIETRLALERKMSLRYRRIKFFERRKMERRIRRLEKLQRTTTDPHSEEQIARQLSKLREDLEYLRFFPKTEKYLSLFVGGDDADVIDRRNRIREQIKANLMAAAASGKDLEETGSDDDGPLDVSEDDFFL-TGSSSD 214          
BLAST of Ggra5609.t1 vs. uniprot
Match: rRNA-processing protein EFG1-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4A9F62 (rRNA-processing protein EFG1-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4A9F62)

HSP 1 Score: 68.2 bits (165), Expect = 5.520e-10
Identity = 59/174 (33.91%), Postives = 98/174 (56.32%), Query Frame = 0
Query:   59 NQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKK---------GDRPEDQEAKLQARRDLQYILRYPKDKKYIALFPSGGH---TDEAKKSVEQMRA-FIEGSGAAPENQTTADTDNAI---ADDFFLDCGSESD 216
            NQIRS+ER+L+   H+      +KK +EL++ + ++A  E    + K   R K+IKFFE R+V+R++  + K+          +R  DQ +KL  + DL Y+  +PK +KY++LF  G +    D+  K  +Q++A  I  + +  + + TA  D+A+    DDFFL  GS +D
Sbjct:   40 NQIRSVERFLRKDLHDEVRKAQEKKLEELKQQQELQARLEL---EHKIRLRDKKIKFFERRRVERMIRRLEKRQRTSSDHASDERILDQLSKL--KEDLNYVRFFPKTEKYVSLFVGGDNPAIVDKRNKLRQQVKANLIAAAASGMDLEETASDDDALDGSEDDFFLS-GSSTD 207          
BLAST of Ggra5609.t1 vs. uniprot
Match: I1LC42 (rRNA-processing protein EFG1 n=17 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=I1LC42_SOYBN)

HSP 1 Score: 67.0 bits (162), Expect = 1.460e-9
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 0
Query:   35 AVQRKNQKAASAASKRKSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERRSRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQA--------RRDLQYILRYPKDKKYIALFPSGGHTDEA------KKSVEQMRAFIEGSGAAPENQTTADTDNAIAD----DFFLDCGSESD 216
            A +R N K    A K K    L  NQIRS+ER L+     LPP V + ++Q+LE  K+ +    R + +RK   R ++IKFFE RK++R +  + K         +  Q         ++DLQY++ +PK++KY+ LF +G  ++        +K +E     I  + +  + + T   D+ + D    DFFL  GS SD
Sbjct:   13 ATRRSNSKPLGIAKKSKPSVSLK-NQIRSLERMLRKN---LPPEVREAQEQKLEALKKQQEIHTRLAAERKIFLRDRKIKFFERRKIERRIRRLEKLHRASSSSSSSAQPYSDQLSSLKKDLQYVMYFPKNEKYLPLFTAGDDSEIVDRRNGLRKQIEDR--LIAAAASGKDLEETGSEDDGLLDLSDDDFFL-AGSSSD 205          
The following BLAST results are available for this feature:
BLAST of Ggra5609.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY912.520e-6653.98rRNA-processing protein EFG1 n=1 Tax=Gracilariopsi... [more]
R7QC221.040e-3640.47rRNA-processing protein EFG1 n=1 Tax=Chondrus cris... [more]
A0A7S2TRG64.080e-1236.62rRNA-processing protein EFG1 n=1 Tax=Lotharella oc... [more]
A0A7S0H0P32.080e-1134.64rRNA-processing protein EFG1 (Fragment) n=2 Tax=Am... [more]
A0A2K1L4L21.290e-1036.70rRNA-processing protein EFG1 n=3 Tax=Physcomitrium... [more]
A0A6I9S1822.170e-1033.14rRNA-processing protein EFG1 n=5 Tax=Arecaceae Tax... [more]
A0A804K8S22.170e-1034.24rRNA-processing protein EFG1 n=3 Tax=Musa TaxID=46... [more]
W1P3B23.360e-1035.84rRNA-processing protein EFG1 n=1 Tax=Amborella tri... [more]
rRNA-processing protein EFG1-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4A9F625.520e-1033.91rRNA-processing protein EFG1-like n=2 Tax=Zingiber... [more]
I1LC421.460e-931.50rRNA-processing protein EFG1 n=17 Tax=indigoferoid... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availablePANTHERPTHR33911:SF1RRNA-PROCESSING PROTEIN EFG1coord: 20..208
NoneNo IPR availablePANTHERPTHR33911RRNA-PROCESSING PROTEIN EFG1coord: 20..208
IPR019310rRNA-processing protein Efg1PFAMPF10153Efg1coord: 59..164
e-value: 5.8E-20
score: 71.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1113363..1114013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1Ggra5609.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1113363..1114013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MASHKRFDNSDDDEKTTSGHDHQFQFKPELPTMKAVQRKNQKAASAASKR
KSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERR
SRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQARRDLQY
ILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAAPENQTTADTD
NAIADDFFLDCGSESD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019310Efg1