Ggra5609.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5609.t1
Unique NameGgra5609.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1113363..1114013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO97201
PFAMsEfg1
Max annot lvl3041|Chlorophyta
Evalue6.34e-12
EggNOG OGsKOG4484@1|root,KOG4484@2759|Eukaryota,37JY8@33090|Viridiplantae,34IEP@3041|Chlorophyta
DescriptionrRNA-processing protein Efg1
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5609Ggra5609Gracilaria gracilis GNS1m malegenetig00000842_pilon 1113363..1114013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1.stop1Ggra5609.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1113363..1113365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1.CDS1Ggra5609.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1113363..1114013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1.exon1Ggra5609.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1113363..1114013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1.start1Ggra5609.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1114011..1114013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5609.t1Ggra5609.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1113363..1114013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MASHKRFDNSDDDEKTTSGHDHQFQFKPELPTMKAVQRKNQKAASAASKR
KSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERR
SRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQARRDLQY
ILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAAPENQTTADTD
NAIADDFFLDCGSESD*
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spliced messenger RNA

>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1113363..1114013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTCACAAGCGATTCGATAACAGCGATGATGACGAGAAAACGAC
GTCTGGTCATGATCATCAGTTTCAGTTCAAACCAGAACTCCCTACCATGA
AAGCCGTTCAGAGAAAGAATCAGAAAGCGGCGTCCGCTGCAAGCAAGAGG
AAGTCAAGATCCAAGCTTCCAGCAAATCAGATTCGGAGCATTGAACGATA
TCTGAAGCACAAGGAACATGAACTCCCTCCCGGGGTCGTGAAGAAAAAGA
AGCAGGAGCTCGAGGAGTGGAAGAGAGTGCGAGCCGAACGAGAGCGAAGA
TCTCGTCAACGAAAGTTTGAAACGCGGTATAAGAGGATCAAATTCTTCGA
ATGCAGGAAAGTCCAGCGTATTTTGGATAGCATTGCTAAGAAGGGTGATA
GGCCAGAGGACCAAGAAGCTAAGCTACAAGCGCGAAGGGATTTGCAGTAC
ATCCTGAGATACCCGAAAGATAAAAAGTACATCGCTTTGTTTCCATCTGG
AGGTCATACGGATGAGGCAAAGAAGAGCGTTGAGCAAATGCGAGCCTTTA
TTGAGGGCTCCGGAGCGGCTCCCGAGAATCAGACTACAGCAGACACTGAT
AATGCTATCGCCGACGATTTCTTTCTGGATTGTGGCAGTGAAAGTGACTA
A
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protein sequence of Ggra5609.t1

>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MASHKRFDNSDDDEKTTSGHDHQFQFKPELPTMKAVQRKNQKAASAASKR
KSRSKLPANQIRSIERYLKHKEHELPPGVVKKKKQELEEWKRVRAERERR
SRQRKFETRYKRIKFFECRKVQRILDSIAKKGDRPEDQEAKLQARRDLQY
ILRYPKDKKYIALFPSGGHTDEAKKSVEQMRAFIEGSGAAPENQTTADTD
NAIADDFFLDCGSESD*
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mRNA from alignment at tig00000842_pilon:1113363..1114013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1113363..1114013- (Gracilaria gracilis GNS1m male)
ATGGCATCTCACAAGCGATTCGATAACAGCGATGATGACGAGAAAACGAC
GTCTGGTCATGATCATCAGTTTCAGTTCAAACCAGAACTCCCTACCATGA
AAGCCGTTCAGAGAAAGAATCAGAAAGCGGCGTCCGCTGCAAGCAAGAGG
AAGTCAAGATCCAAGCTTCCAGCAAATCAGATTCGGAGCATTGAACGATA
TCTGAAGCACAAGGAACATGAACTCCCTCCCGGGGTCGTGAAGAAAAAGA
AGCAGGAGCTCGAGGAGTGGAAGAGAGTGCGAGCCGAACGAGAGCGAAGA
TCTCGTCAACGAAAGTTTGAAACGCGGTATAAGAGGATCAAATTCTTCGA
ATGCAGGAAAGTCCAGCGTATTTTGGATAGCATTGCTAAGAAGGGTGATA
GGCCAGAGGACCAAGAAGCTAAGCTACAAGCGCGAAGGGATTTGCAGTAC
ATCCTGAGATACCCGAAAGATAAAAAGTACATCGCTTTGTTTCCATCTGG
AGGTCATACGGATGAGGCAAAGAAGAGCGTTGAGCAAATGCGAGCCTTTA
TTGAGGGCTCCGGAGCGGCTCCCGAGAATCAGACTACAGCAGACACTGAT
AATGCTATCGCCGACGATTTCTTTCTGGATTGTGGCAGTGAAAGTGACTA
A
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Coding sequence (CDS) from alignment at tig00000842_pilon:1113363..1114013-

>Ggra5609.t1 ID=Ggra5609.t1|Name=Ggra5609.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1113363..1114013- (Gracilaria gracilis GNS1m male)
ATGGCATCTCACAAGCGATTCGATAACAGCGATGATGACGAGAAAACGAC
GTCTGGTCATGATCATCAGTTTCAGTTCAAACCAGAACTCCCTACCATGA
AAGCCGTTCAGAGAAAGAATCAGAAAGCGGCGTCCGCTGCAAGCAAGAGG
AAGTCAAGATCCAAGCTTCCAGCAAATCAGATTCGGAGCATTGAACGATA
TCTGAAGCACAAGGAACATGAACTCCCTCCCGGGGTCGTGAAGAAAAAGA
AGCAGGAGCTCGAGGAGTGGAAGAGAGTGCGAGCCGAACGAGAGCGAAGA
TCTCGTCAACGAAAGTTTGAAACGCGGTATAAGAGGATCAAATTCTTCGA
ATGCAGGAAAGTCCAGCGTATTTTGGATAGCATTGCTAAGAAGGGTGATA
GGCCAGAGGACCAAGAAGCTAAGCTACAAGCGCGAAGGGATTTGCAGTAC
ATCCTGAGATACCCGAAAGATAAAAAGTACATCGCTTTGTTTCCATCTGG
AGGTCATACGGATGAGGCAAAGAAGAGCGTTGAGCAAATGCGAGCCTTTA
TTGAGGGCTCCGGAGCGGCTCCCGAGAATCAGACTACAGCAGACACTGAT
AATGCTATCGCCGACGATTTCTTTCTGGATTGTGGCAGTGAAAGTGACTA
A
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