Ggra558.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra558.t1
Unique NameGgra558.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length448
Homology
BLAST of Ggra558.t1 vs. uniprot
Match: R7QG95 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG95_CHOCR)

HSP 1 Score: 174 bits (441), Expect = 4.020e-46
Identity = 118/376 (31.38%), Postives = 196/376 (52.13%), Query Frame = 0
Query:   65 PIMMLAGVYLDSGAPKLTG----PLQ-SKTARVRVLSASCLIAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTERPGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAPTFLMSWPSE------GEEQSADELDSEQQPILGRPAAVGKIGLGELLRSSSFWYYVFATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAWLTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVKALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLMASVEWMAGTIE-RPADYNPFYWIAALWSL 428
            P+M+L GV L SG  + T     P++ SKT ++R+ SA   + F  + L  +G +    + +++ V +Q  P  + + + LELL  W+  RPGLAVG+G  A+GLG I F  LF+  +  V    A+      LV  +     L+SWP +      G  +S  ++D E + I  R          +L     FW+YV A F     Y   PY+F +G  F      ++  +QI    +    L+   L+D + +G+GF+  GS+N+ +L  ++QS  ++ ++ FS  + + GFV   +++ +V A  A  + ++A D++   NS+L+FGVG  +A+G+GE  S  +MA+V+  A + E  P  YN FY I  + S+
Sbjct:    2 PVMLLVGVVL-SGEEENTRYAALPMRFSKTQKIRIASAIGSLLFGTIGLGGIGVSMGSKSLMIIAVTLQGIPFAIYYLISLELLAAWSPARPGLAVGLGNLAYGLGTIAFSGLFEYLLERVKCSTALFITGIALVFFSAPSIALLSWPCKKCSTQGGFPESYADVDDEGELISWR----------KLPFLIPFWHYVLAIFAGQTGYAFIPYFFNIGRSFGMSSTTVIRSYQIAITCSTVFRLLVGVLSDCLKWGNGFFSIGSKNVTLLLFIMQSFSYIALISFSQTLNYDGFVFSASVILMVFAGVAVESAVLARDIFSPSNSSLIFGVGASIAMGIGEVMSGKIMAAVDLSARSAELSPEKYNMFYVIGVVLSI 366          
BLAST of Ggra558.t1 vs. uniprot
Match: A0A2V3IG41 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG41_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 4.210e-25
Identity = 70/230 (30.43%), Postives = 114/230 (49.57%), Query Frame = 0
Query:   11 AFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDGVWETSMGLLHFVSAPIMMLAGVYLDSGAPKL--TGPLQSKTARVRVLSASCLIAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCL----ELLLVWNTERPGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAPTFLMSWPSEGEEQSADELDSEQQPILGRPAAVGK 234
            AF N  +   ++F  G T  LG++ + +E  AS S +LDGVW +SM   +      +M  G++L  G  +     P  S+T+R+R+   +  I+FS L L  LG A    +P+L+ +G+ +  LG GF +C     EL   W    PGLA+G+ Q A+GLG++    ++  F+       A++    ++ L   A   L+ WP     + A +  SE  P+L      G+
Sbjct:    9 AFKNVFIVSTIMFIIGGTTVLGVYNLAIEESASDSDALDGVWTSSMAYNNITCTISLMACGLFLSQGCDESDPASPWASRTSRIRIALFTAAISFSLLGLGGLGIA--FESPLLIKLGLSS--LGFGFGICYLLGGELATAWLPNNPGLAIGLCQLAYGLGSVVLSDVYSRFVSNTNVARAVYLTTAIMSLPCFASVMLVEWPELPCSEEASK--SEDDPLLSNHLPDGR 232          
The following BLAST results are available for this feature:
BLAST of Ggra558.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QG954.020e-4631.38Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IG414.210e-2530.43Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 171..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 351..372
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 246..267
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 302..320
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 373..377
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 400..418
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 419..438
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..245
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 439..447
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 321..339
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 268..278
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 378..399
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 340..350
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..301
NoneNo IPR availableTMHMMTMhelixcoord: 124..146
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 416..435
NoneNo IPR availableTMHMMTMhelixcoord: 379..401
NoneNo IPR availableTMHMMTMhelixcoord: 344..366
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 279..301
NoneNo IPR availableTMHMMTMhelixcoord: 57..74
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 80..440

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:290827..292259 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1Ggra558.t1Gracilaria gracilis GNS1m malemRNAtig00000153_pilon 290827..292259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MVSPPQATPSAFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDG
VWETSMGLLHFVSAPIMMLAGVYLDSGAPKLTGPLQSKTARVRVLSASCL
IAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTER
PGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAP
TFLMSWPSEGEEQSADELDSEQQPILGRPAAVGKIGLGELLRSSSFWYYV
FATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAW
LTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVK
ALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLM
ASVEWMAGTIERPADYNPFYWIAALWSLLALVAVARTTRWSPCVTTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf