Ggra558.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra558.t1
Unique NameGgra558.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:290827..292259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1460634.JCM19037_4396
PFAMsMFS_1
Max annot lvl91061|Bacilli
KEGG koko:K08177
KEGG TC2.A.1.11
Evalue5.14e-08
EggNOG OGsCOG2223@1|root,COG2223@2|Bacteria,1TPR9@1239|Firmicutes,4HB93@91061|Bacilli
DescriptionCOG0477 Permeases of the major facilitator superfamily
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra558Ggra558Gracilaria gracilis GNS1m malegenetig00000153_pilon 290827..292259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1Ggra558.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 290827..292259 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1.start1Ggra558.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 290827..290829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1.CDS1Ggra558.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 290827..291229 +
Ggra558.t1.CDS2Ggra558.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000153_pilon 291319..292259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1.exon1Ggra558.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 290827..291229 +
Ggra558.t1.exon2Ggra558.t1.exon2Gracilaria gracilis GNS1m maleexontig00000153_pilon 291319..292259 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1.intron1Ggra558.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000153_pilon 291230..291318 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra558.t1.stop1Ggra558.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 292257..292259 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=448bp
MVSPPQATPSAFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDG
VWETSMGLLHFVSAPIMMLAGVYLDSGAPKLTGPLQSKTARVRVLSASCL
IAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTER
PGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAP
TFLMSWPSEGEEQSADELDSEQQPILGRPAAVGKIGLGELLRSSSFWYYV
FATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAW
LTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVK
ALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLM
ASVEWMAGTIERPADYNPFYWIAALWSLLALVAVARTTRWSPCVTTR*
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spliced messenger RNA

>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000153_pilon:290827..292259+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTTGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTTTCTCGCTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGG
CCCGGACTTGCTGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAAT
CTTCTTCGTACAATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGA
ACGCCATTCACTGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCT
ACCTTTTTGATGAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGA
GTTGGACAGCGAACAACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAA
AGATCGGATTGGGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTT
TTCGCAACTTTCACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTT
CAAGCTTGGGCTTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGT
TCCAAATCACGAACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGG
CTGACGGATTACATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAG
GAACATGATGATGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCA
TGGTGCAGTTCTCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAA
GCGCTGCTGAAGATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGAT
GGCGAACGACCTGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGG
GCGGCGGTTTGGCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATG
GCGAGCGTGGAATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAA
CCCGTTTTACTGGATTGCTGCGTTGTGGAGTTTGCTCGCGTTAGTTGCTG
TGGCGCGCACCACCAGGTGGTCACCATGCGTGACCACTCGCTGA
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protein sequence of Ggra558.t1

>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MVSPPQATPSAFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDG
VWETSMGLLHFVSAPIMMLAGVYLDSGAPKLTGPLQSKTARVRVLSASCL
IAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTER
PGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAP
TFLMSWPSEGEEQSADELDSEQQPILGRPAAVGKIGLGELLRSSSFWYYV
FATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAW
LTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVK
ALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLM
ASVEWMAGTIERPADYNPFYWIAALWSLLALVAVARTTRWSPCVTTR*
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mRNA from alignment at tig00000153_pilon:290827..292259+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1433bp|location=Sequence derived from alignment at tig00000153_pilon:290827..292259+ (Gracilaria gracilis GNS1m male)
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTTGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTATGTGCTCGGTCAGGCGTTGCATCTCGACGGTAGCGCTTGTGGGT
GACGTCTAACTCTCCAATTTTGTTATGTTTTCACTGGAGCAGGTTTCTCG
CTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGGCCCGGACTTGC
TGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAATCTTCTTCGTAC
AATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGAACGCCATTCAC
TGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCTACCTTTTTGAT
GAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGAGTTGGACAGCG
AACAACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAAAGATCGGATTG
GGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTTTTCGCAACTTT
CACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTTCAAGCTTGGGC
TTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGTTCCAAATCACG
AACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGGCTGACGGATTA
CATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAGGAACATGATGA
TGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCATGGTGCAGTTC
TCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAAGCGCTGCTGAA
GATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGATGGCGAACGACC
TGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGGGCGGCGGTTTG
GCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATGGCGAGCGTGGA
ATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAACCCGTTTTACT
GGATTGCTGCGTTGTGGAGTTTGCTCGCGTTAGTTGCTGTGGCGCGCACC
ACCAGGTGGTCACCATGCGTGACCACTCGCTGA
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Coding sequence (CDS) from alignment at tig00000153_pilon:290827..292259+

>Ggra558.t1 ID=Ggra558.t1|Name=Ggra558.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000153_pilon:290827..292259+ (Gracilaria gracilis GNS1m male)
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTTGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTTTCTCGCTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGG
CCCGGACTTGCTGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAAT
CTTCTTCGTACAATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGA
ACGCCATTCACTGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCT
ACCTTTTTGATGAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGA
GTTGGACAGCGAACAACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAA
AGATCGGATTGGGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTT
TTCGCAACTTTCACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTT
CAAGCTTGGGCTTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGT
TCCAAATCACGAACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGG
CTGACGGATTACATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAG
GAACATGATGATGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCA
TGGTGCAGTTCTCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAA
GCGCTGCTGAAGATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGAT
GGCGAACGACCTGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGG
GCGGCGGTTTGGCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATG
GCGAGCGTGGAATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAA
CCCGTTTTACTGGATTGCTGCGTTGTGGAGTTTGCTCGCGTTAGTTGCTG
TGGCGCGCACCACCAGGTGGTCACCATGCGTGACCACTCGCTGA
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