Ggra5539.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5539.t1
Unique NameGgra5539.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Homology
BLAST of Ggra5539.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=unclassified Shewanella TaxID=196818 RepID=UPI001BBBADA6 (hypothetical protein n=1 Tax=unclassified Shewanella TaxID=196818 RepID=UPI001BBBADA6)

HSP 1 Score: 191 bits (484), Expect = 1.880e-58
Identity = 96/190 (50.53%), Postives = 137/190 (72.11%), Query Frame = 0
Query:    5 HLALVFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIETTWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFV-TSVISNAPTGRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYTLVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDC 193
            H+ +  LL+++A A+    N ++ ++N+YS   TFGSV+V+CPIE TW TVGN K+WF++V+G  L++I +  G+ R+L + V+Y V T       TG +++R+I LSD+ Y+LVTTF+ S+LPLMPWTT V LE+VTF++  VNYTL+ F+Q GSINVP+ R+   + +IQ LF  VFAPSLKE FD C
Sbjct:    6 HIFIYVLLSASASAS---TNSIS-TVNKYSEMQTFGSVVVQCPIENTWKTVGNVKSWFESVLGDFLVSIKITGGD-RELGTTVSYEVDTGAGEENVTGHSEERLIELSDHSYQLVTTFNHSSLPLMPWTTIVTLEKVTFIDNPVNYTLIKFSQSGSINVPQSRKEATKAKIQKLFDTVFAPSLKEKFDGC 190          
BLAST of Ggra5539.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Shewanella schlegeliana TaxID=190308 RepID=UPI00192AA0A0 (hypothetical protein n=1 Tax=Shewanella schlegeliana TaxID=190308 RepID=UPI00192AA0A0)

HSP 1 Score: 188 bits (477), Expect = 2.300e-57
Identity = 97/193 (50.26%), Postives = 134/193 (69.43%), Query Frame = 0
Query:    2 TLPHLALVFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIETTWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFV-TSVISNAPTGRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYTLVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDC 193
            TL +++   LL ++A A    +      +N+YS F TF SV+V+CPI+ TW T+GN K WF+AV+G  L++IT V G  R+LQS  +Y + T    ++ TG  ++R+I LSD++Y+LVTTF+SSTLPLMPWTT V LE+VT+++  V+YTLV FAQ G INVP + +     +I+ LF  VFAPSLKE FDDC
Sbjct:    3 TLTYISTSVLLFASASAXXXASP--LTEVNKYSEFKTFSSVVVQCPIDKTWKTIGNVKNWFKAVLGDSLVSIT-VTGEDRELQSVFSYDINTGTQQDSATGHNEERLIELSDFNYQLVTTFNSSTLPLMPWTTKVTLEKVTYIDVPVDYTLVKFAQSGVINVPSKMQAATIAKIEQLFDSVFAPSLKEKFDDC 192          
BLAST of Ggra5539.t1 vs. uniprot
Match: hypothetical protein n=2 Tax=Shewanella TaxID=22 RepID=UPI000D59A1A3 (hypothetical protein n=2 Tax=Shewanella TaxID=22 RepID=UPI000D59A1A3)

HSP 1 Score: 186 bits (472), Expect = 1.160e-56
Identity = 95/186 (51.08%), Postives = 130/186 (69.89%), Query Frame = 0
Query:    9 VFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIETTWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFV-TSVISNAPTGRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYTLVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDC 193
            +++L ST+      AN ++  +N+YS   TFG VIV+CPIE TW TVGN K WF++V+G  L++I  + G  R+L++ V+Y V T V     +G +++R+I LSDY+Y LVTTF+ STLPLMPWTT V LE+VTF++  V+YTL+ F+Q GSINVP   +   + +IQ LF  VFAPSLKE FD C
Sbjct:    9 IYILLSTS----ASANPISP-VNKYSEMQTFGGVIVQCPIEKTWKTVGNIKGWFESVLGDFLVSIK-INGGERELETTVSYDVETGVREENASGHSEERLIELSDYNYRLVTTFNHSTLPLMPWTTTVTLEKVTFIDNPVDYTLIKFSQSGSINVPPSSKEATKAKIQKLFDTVFAPSLKEKFDGC 188          
The following BLAST results are available for this feature:
BLAST of Ggra5539.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
hypothetical protein n=1 Tax=unclassified Shewanella TaxID=196818 RepID=UPI001BBBADA61.880e-5850.53hypothetical protein n=1 Tax=unclassified Shewanel... [more]
hypothetical protein n=1 Tax=Shewanella schlegeliana TaxID=190308 RepID=UPI00192AA0A02.300e-5750.26hypothetical protein n=1 Tax=Shewanella schlegelia... [more]
hypothetical protein n=2 Tax=Shewanella TaxID=22 RepID=UPI000D59A1A31.160e-5651.08hypothetical protein n=2 Tax=Shewanella TaxID=22 R... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..199
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:862989..863657 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1Ggra5539.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 862989..863657 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MTLPHLALVFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIET
TWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFVTSVISNAPT
GRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYT
LVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDCEQSETQ*
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