Ggra5539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5539.t1
Unique NameGgra5539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:862989..863657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5539Ggra5539Gracilaria gracilis GNS1m malegenetig00000842_pilon 862989..863657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1Ggra5539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 862989..863657 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1.start1Ggra5539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 862989..862991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1.CDS1Ggra5539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 862989..863083 +
Ggra5539.t1.CDS2Ggra5539.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 863153..863657 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1.exon1Ggra5539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 862989..863083 +
Ggra5539.t1.exon2Ggra5539.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 863153..863657 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1.intron1Ggra5539.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 863084..863152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5539.t1.stop1Ggra5539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 863655..863657 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MTLPHLALVFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIET
TWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFVTSVISNAPT
GRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYT
LVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDCEQSETQ*
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spliced messenger RNA

>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000842_pilon:862989..863657+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCCCCCACCTTGCACTTGTCTTTCTTCTTGCTAGCACAGCTCA
TGCCACTTTCTGCGAGGCGAACGGCGTCGCCGACAGCATCAACAGATACT
CGGCGTTTGACACGTTTGGCAGCGTCATAGTCAAATGCCCCATAGAAACT
ACTTGGAACACTGTCGGTAACGCGAAGACCTGGTTCCAAGCCGTGATAGG
AAAGCGCCTCATAAACATAACTCTTGTAGAAGGCAACGGACGTCAACTGC
AAAGCAAGGTCAACTATTTCGTCACCTCAGTAATTTCGAACGCGCCTACT
GGCCGCACGCAACAGAGAGTAATCTCATTGTCTGACTATGACTATGAACT
GGTTACTACTTTCGACTCATCCACGTTACCTCTTATGCCATGGACCACTT
TCGTGAGACTTGAGCGTGTCACCTTCCTGGAACGCCGTGTCAATTATACG
CTTGTCACTTTTGCGCAGCAAGGAAGTATCAATGTGCCCGAAGAACGACG
ACCGATGGTTCGTGACCAGATTCAATCTCTGTTTTATAAGGTGTTTGCAC
CTTCTTTGAAAGAGGCGTTTGACGACTGTGAACAGTCTGAGACGCAGTAA
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protein sequence of Ggra5539.t1

>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MTLPHLALVFLLASTAHATFCEANGVADSINRYSAFDTFGSVIVKCPIET
TWNTVGNAKTWFQAVIGKRLINITLVEGNGRQLQSKVNYFVTSVISNAPT
GRTQQRVISLSDYDYELVTTFDSSTLPLMPWTTFVRLERVTFLERRVNYT
LVTFAQQGSINVPEERRPMVRDQIQSLFYKVFAPSLKEAFDDCEQSETQ*
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mRNA from alignment at tig00000842_pilon:862989..863657+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000842_pilon:862989..863657+ (Gracilaria gracilis GNS1m male)
ATGACGCTCCCCCACCTTGCACTTGTCTTTCTTCTTGCTAGCACAGCTCA
TGCCACTTTCTGCGAGGCGAACGGCGTCGCCGACAGCATCAACAGGTACG
TGTTCGCCATACCAAACTCGCCCATTCATTCCAGAACTAACTCTCATTCT
TTCCGAACCAAAAGATACTCGGCGTTTGACACGTTTGGCAGCGTCATAGT
CAAATGCCCCATAGAAACTACTTGGAACACTGTCGGTAACGCGAAGACCT
GGTTCCAAGCCGTGATAGGAAAGCGCCTCATAAACATAACTCTTGTAGAA
GGCAACGGACGTCAACTGCAAAGCAAGGTCAACTATTTCGTCACCTCAGT
AATTTCGAACGCGCCTACTGGCCGCACGCAACAGAGAGTAATCTCATTGT
CTGACTATGACTATGAACTGGTTACTACTTTCGACTCATCCACGTTACCT
CTTATGCCATGGACCACTTTCGTGAGACTTGAGCGTGTCACCTTCCTGGA
ACGCCGTGTCAATTATACGCTTGTCACTTTTGCGCAGCAAGGAAGTATCA
ATGTGCCCGAAGAACGACGACCGATGGTTCGTGACCAGATTCAATCTCTG
TTTTATAAGGTGTTTGCACCTTCTTTGAAAGAGGCGTTTGACGACTGTGA
ACAGTCTGAGACGCAGTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:862989..863657+

>Ggra5539.t1 ID=Ggra5539.t1|Name=Ggra5539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000842_pilon:862989..863657+ (Gracilaria gracilis GNS1m male)
ATGACGCTCCCCCACCTTGCACTTGTCTTTCTTCTTGCTAGCACAGCTCA
TGCCACTTTCTGCGAGGCGAACGGCGTCGCCGACAGCATCAACAGATACT
CGGCGTTTGACACGTTTGGCAGCGTCATAGTCAAATGCCCCATAGAAACT
ACTTGGAACACTGTCGGTAACGCGAAGACCTGGTTCCAAGCCGTGATAGG
AAAGCGCCTCATAAACATAACTCTTGTAGAAGGCAACGGACGTCAACTGC
AAAGCAAGGTCAACTATTTCGTCACCTCAGTAATTTCGAACGCGCCTACT
GGCCGCACGCAACAGAGAGTAATCTCATTGTCTGACTATGACTATGAACT
GGTTACTACTTTCGACTCATCCACGTTACCTCTTATGCCATGGACCACTT
TCGTGAGACTTGAGCGTGTCACCTTCCTGGAACGCCGTGTCAATTATACG
CTTGTCACTTTTGCGCAGCAAGGAAGTATCAATGTGCCCGAAGAACGACG
ACCGATGGTTCGTGACCAGATTCAATCTCTGTTTTATAAGGTGTTTGCAC
CTTCTTTGAAAGAGGCGTTTGACGACTGTGAACAGTCTGAGACGCAGTAA
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