Ggra5529.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5529.t1
Unique Name	Ggra5529.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	249

Homology

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BLAST of Ggra5529.t1 vs. uniprot
Match: A0A2V3IX99 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX99_9FLOR)

HSP 1 Score: 202 bits (514), Expect = 1.560e-60
Identity = 138/266 (51.88%), Postives = 168/266 (63.16%), Query Frame = 0

Query:    5 QTPQSH--------PVWRRVLAVTTLSASMLFTPL----PLSRQRAQQGLHFAA-PAPALAVPAARAAT-STTXXXXXXXXXXXXXXXTLGGLVMRAIVRSRQDDDAYRNKVVEQSNRLQEEENLRALRIKRTEMEAVEGDDSS---ADEDDEFMKAFRERVSDL--QTDDQQQPNDDQDATEKYGKQELDLVNTQDRGTGSAVLDKPDSDAPTTP--TASQSDQTQDSETNPDDA-DEVPPSMADPEQAEMLKRMWNLNSFDKND 248
            Q PQ H        P+WRR+LA TTLSAS+ F PL    P      Q     AA PA AL V   +++T +T+               T+G LVMRA+V S++DDDAYR KV EQS RLQ+EE++RALRI+R+EMEAV  D        +DD+F++AFRERVS L  + D      DD + ++KY KQ+LDLVN  DR TGSAVLDKPD D P TP  TA+  +  + S +  DD  D  PPSMADPEQAEMLKRMWNLNSFDKND
Sbjct:   56 QRPQPHHHRPPAKLPLWRRLLAATTLSASVFFAPLHSVCPHDSNSHQPRSSLAAVPALALGVTTTKSSTPNTSRASDVESAALTLAAVTVGALVMRAVVNSQRDDDAYRKKVAEQSQRLQQEEDMRALRIQRSEMEAVNTDSDKQPQTSDDDQFLQAFRERVSGLNMERDPDDTEEDDTNNSDKYDKQQLDLVNMPDRSTGSAVLDKPD-DLPDTPDPTAANKEPVEPSSSQTDDEHDAQPPSMADPEQAEMLKRMWNLNSFDKND 320

The following BLAST results are available for this feature:

BLAST of Ggra5529.t1 vs. uniprot

BLAST of Ggra5529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IX99	1.560e-60	51.88	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..212
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 90..248
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..59
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..89
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 30..40

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:829908..830654 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5529.t1	Ggra5529.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000842_pilon 829908..830654 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MASDQTPQSHPVWRRVLAVTTLSASMLFTPLPLSRQRAQQGLHFAAPAPA
LAVPAARAATSTTNTSDVETAALTLAAVTLGGLVMRAIVRSRQDDDAYRN
KVVEQSNRLQEEENLRALRIKRTEMEAVEGDDSSADEDDEFMKAFRERVS
DLQTDDQQQPNDDQDATEKYGKQELDLVNTQDRGTGSAVLDKPDSDAPTT
PTASQSDQTQDSETNPDDADEVPPSMADPEQAEMLKRMWNLNSFDKND*