Ggra5529.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5529.t1
Unique NameGgra5529.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:829908..830654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5529Ggra5529Gracilaria gracilis GNS1m malegenetig00000842_pilon 829908..830654 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5529.t1.start1Ggra5529.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 829908..829910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5529.t1.CDS1Ggra5529.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 829908..830654 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5529.t1.exon1Ggra5529.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 829908..830654 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5529.t1.stop1Ggra5529.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 830652..830654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5529.t1Ggra5529.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 829908..830654 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MASDQTPQSHPVWRRVLAVTTLSASMLFTPLPLSRQRAQQGLHFAAPAPA
LAVPAARAATSTTNTSDVETAALTLAAVTLGGLVMRAIVRSRQDDDAYRN
KVVEQSNRLQEEENLRALRIKRTEMEAVEGDDSSADEDDEFMKAFRERVS
DLQTDDQQQPNDDQDATEKYGKQELDLVNTQDRGTGSAVLDKPDSDAPTT
PTASQSDQTQDSETNPDDADEVPPSMADPEQAEMLKRMWNLNSFDKND*
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spliced messenger RNA

>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000842_pilon:829908..830654+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTGACCAAACGCCGCAGTCGCACCCGGTCTGGCGGCGCGTGCT
TGCTGTAACTACTCTGTCTGCCTCCATGCTGTTCACGCCTTTACCTCTGT
CGCGGCAACGTGCTCAACAAGGCCTGCACTTTGCCGCCCCCGCCCCTGCG
CTGGCCGTCCCGGCTGCTCGTGCTGCCACTTCTACCACCAACACCTCGGA
TGTTGAGACTGCTGCCCTCACTTTGGCCGCTGTCACGCTAGGGGGGCTCG
TCATGCGCGCCATTGTGCGCTCCCGTCAGGACGATGACGCGTATCGCAAC
AAGGTCGTCGAGCAGTCCAACCGCTTGCAGGAGGAGGAGAATCTCAGGGC
ATTGCGCATCAAGCGTACTGAGATGGAGGCTGTTGAAGGCGATGATTCTT
CTGCTGATGAAGACGACGAGTTCATGAAGGCGTTTAGAGAACGCGTGTCT
GACTTGCAGACTGATGATCAGCAACAGCCTAACGACGACCAAGACGCCAC
TGAAAAGTACGGCAAGCAGGAGCTGGATTTGGTAAACACGCAAGACCGAG
GAACGGGAAGTGCCGTGCTGGATAAGCCCGACAGTGATGCTCCTACTACT
CCAACTGCCTCGCAATCTGACCAAACGCAAGATTCTGAAACTAATCCAGA
CGACGCTGATGAGGTGCCTCCCTCCATGGCCGACCCGGAACAGGCTGAAA
TGCTCAAACGAATGTGGAACCTTAACTCTTTTGACAAGAATGATTAA
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protein sequence of Ggra5529.t1

>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MASDQTPQSHPVWRRVLAVTTLSASMLFTPLPLSRQRAQQGLHFAAPAPA
LAVPAARAATSTTNTSDVETAALTLAAVTLGGLVMRAIVRSRQDDDAYRN
KVVEQSNRLQEEENLRALRIKRTEMEAVEGDDSSADEDDEFMKAFRERVS
DLQTDDQQQPNDDQDATEKYGKQELDLVNTQDRGTGSAVLDKPDSDAPTT
PTASQSDQTQDSETNPDDADEVPPSMADPEQAEMLKRMWNLNSFDKND*
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mRNA from alignment at tig00000842_pilon:829908..830654+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000842_pilon:829908..830654+ (Gracilaria gracilis GNS1m male)
ATGGCTTCTGACCAAACGCCGCAGTCGCACCCGGTCTGGCGGCGCGTGCT
TGCTGTAACTACTCTGTCTGCCTCCATGCTGTTCACGCCTTTACCTCTGT
CGCGGCAACGTGCTCAACAAGGCCTGCACTTTGCCGCCCCCGCCCCTGCG
CTGGCCGTCCCGGCTGCTCGTGCTGCCACTTCTACCACCAACACCTCGGA
TGTTGAGACTGCTGCCCTCACTTTGGCCGCTGTCACGCTAGGGGGGCTCG
TCATGCGCGCCATTGTGCGCTCCCGTCAGGACGATGACGCGTATCGCAAC
AAGGTCGTCGAGCAGTCCAACCGCTTGCAGGAGGAGGAGAATCTCAGGGC
ATTGCGCATCAAGCGTACTGAGATGGAGGCTGTTGAAGGCGATGATTCTT
CTGCTGATGAAGACGACGAGTTCATGAAGGCGTTTAGAGAACGCGTGTCT
GACTTGCAGACTGATGATCAGCAACAGCCTAACGACGACCAAGACGCCAC
TGAAAAGTACGGCAAGCAGGAGCTGGATTTGGTAAACACGCAAGACCGAG
GAACGGGAAGTGCCGTGCTGGATAAGCCCGACAGTGATGCTCCTACTACT
CCAACTGCCTCGCAATCTGACCAAACGCAAGATTCTGAAACTAATCCAGA
CGACGCTGATGAGGTGCCTCCCTCCATGGCCGACCCGGAACAGGCTGAAA
TGCTCAAACGAATGTGGAACCTTAACTCTTTTGACAAGAATGATTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:829908..830654+

>Ggra5529.t1 ID=Ggra5529.t1|Name=Ggra5529.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000842_pilon:829908..830654+ (Gracilaria gracilis GNS1m male)
ATGGCTTCTGACCAAACGCCGCAGTCGCACCCGGTCTGGCGGCGCGTGCT
TGCTGTAACTACTCTGTCTGCCTCCATGCTGTTCACGCCTTTACCTCTGT
CGCGGCAACGTGCTCAACAAGGCCTGCACTTTGCCGCCCCCGCCCCTGCG
CTGGCCGTCCCGGCTGCTCGTGCTGCCACTTCTACCACCAACACCTCGGA
TGTTGAGACTGCTGCCCTCACTTTGGCCGCTGTCACGCTAGGGGGGCTCG
TCATGCGCGCCATTGTGCGCTCCCGTCAGGACGATGACGCGTATCGCAAC
AAGGTCGTCGAGCAGTCCAACCGCTTGCAGGAGGAGGAGAATCTCAGGGC
ATTGCGCATCAAGCGTACTGAGATGGAGGCTGTTGAAGGCGATGATTCTT
CTGCTGATGAAGACGACGAGTTCATGAAGGCGTTTAGAGAACGCGTGTCT
GACTTGCAGACTGATGATCAGCAACAGCCTAACGACGACCAAGACGCCAC
TGAAAAGTACGGCAAGCAGGAGCTGGATTTGGTAAACACGCAAGACCGAG
GAACGGGAAGTGCCGTGCTGGATAAGCCCGACAGTGATGCTCCTACTACT
CCAACTGCCTCGCAATCTGACCAAACGCAAGATTCTGAAACTAATCCAGA
CGACGCTGATGAGGTGCCTCCCTCCATGGCCGACCCGGAACAGGCTGAAA
TGCTCAAACGAATGTGGAACCTTAACTCTTTTGACAAGAATGATTAA
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