Ggra5517.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5517.t1
Unique NameGgra5517.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Homology
BLAST of Ggra5517.t1 vs. uniprot
Match: A0A2V3J388 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J388_9FLOR)

HSP 1 Score: 144 bits (364), Expect = 7.140e-35
Identity = 104/387 (26.87%), Postives = 176/387 (45.48%), Query Frame = 0
Query:    1 MAEKGYRFAINNGLVDLPSRRCSALAGAPLISDEIAIFGAVSSNASNL-EQVGQLLRPFHVGTWLMLAMGFVVLIVLPLAIGAKYHWFLPSLRTTSPSL-----------------------------------TTENDSGEDSNLVNGQSDSE---------------REELRVAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASIN-IVKGPSQTEHAQFAVPSKTALEVVWENEVTQ-----HWKQDLPLGGRPWTECRSTEECFRWLTSGK--VKYVVSFETRGKYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDSQCARHAVSHIRPLTLFLPMMIFVFPSLV 328
            MA +GY+FAI   +++   R+C   +  P + + + I G     A  L +Q+ QL++PF  GTW+ + +  +++++L   +   +H    +   T+  L                                   +T+N +  +    N  S SE               R +  VA +L+R +++    +  LFYE AVV FLF QR   I   V   S  E   FAV   +ALE +W   V        WK  + L   PW  C  TE+C R +  G   V++ V++E  G +L+    +CD ++ F+T   L+ FN  W  N      K+ Q DR++++LR++G +  L ++++ D  C R  +  I P+ L +P+++ V P L+
Sbjct:  224 MARRGYQFAITGPMLETAQRKCEHYSSGPWLDNPMIIIGRNEPPAIRLGDQISQLVKPFSPGTWITICVVLLLIVILSFILVNVFHVSGSNSLFTAYMLLIGDREQALLFGRSHGKRKKGRRKSCFNMFWLSRRSTKNPNASEIRQSNASSRSESEVCSIDLVAETEQYRSQYNVATSLFRFALICFAGLFFLFYEAAVVQFLFHQRRIEITKSVTTLSDEELRSFAVMGDSALEDIWLATVDPGGSRVDWKNKMNL---PWKRCSKTEDCIRMVKDGTDGVRFTVTYEVEGSFLIHELSDCDHLTRFDTTESLHYFNGGWLMNSLVDHEKRRQFDRELVALRINGSVSQLLNQYA-DHYCKRDNIVSIGPIILVIPIIVLVLPPLI 606          
BLAST of Ggra5517.t1 vs. uniprot
Match: A0A2V3IE21 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE21_9FLOR)

HSP 1 Score: 136 bits (342), Expect = 4.030e-32
Identity = 105/379 (27.70%), Postives = 170/379 (44.85%), Query Frame = 0
Query:    1 MAEKGYRFAINNGLVDLPSRRCSALAGAPLISDEIAIFGAVS-SNASNLEQVGQLLRPFHVGTWLMLAMGFVVLIVLPLAI--------------------GAKYHWFLPSLRTTSPSLTTENDSGEDSN-----------------LVNGQSDSEREE----LR--VAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASINI-VKGPSQTEHAQFAVPSKTALEVVWENEVTQHWKQDLPLGGR-----PWTECRSTEECFRWLTSGK--VKYVVSFETRGKYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDSQCARHAVSHIRPLTLFLPMMIFVFPSL 327
            MA +GYRF ++  +++ P R+C   A  P +   + I G  S  +  +   + QL +PF   +W+ L +   V ++L + I                    G   H          P    ENDS E  +                 + NG    +R      LR  +A+ L R S +   A+  +FYE+++VNF+FQQ+N  I   V   S  E  +F++   +ALE +W   V  H    L   G      PW  CR+  +C  W  +GK  VK+ VS+E + +  L     C+ +  FET R L+TFN+ W YN       + + DR+I++LR+ G +  +++ +  D  C       ++ L + +P++IFV P L
Sbjct:  155 MAGRGYRFVVSGPMLETPQRKCYHQASGPWLDSRMVIIGRNSPEDVVSTNPLKQLTQPFETLSWVTLVLFLFVYLLLGIGIVNRIRRRRNVSLVTALFIFTGDLEHAIKHETCPQPPRAERENDSIESGDGSTSDGTSRTASTVHVSVSNGHLGEQRRRRISFLRYSLAINLIRVSFLFFVALFVMFYELSLVNFVFQQQNLHIKKDVDSLSPNELNKFSIMKNSALENIWNRTVNPH---GLKYDGTNDTQIPWKRCRNALQCIDWTLNGKYGVKFTVSYELQAQNALQTIASCEELVFFETRRNLHTFNSGWLYNSAVPENIRKRYDREIVALRIDGTLTRIYNSYV-DFTCEERRTLKVKSLIIVIPILIFVLPPL 529          
BLAST of Ggra5517.t1 vs. uniprot
Match: A0A2V3J4B8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B8_9FLOR)

HSP 1 Score: 130 bits (328), Expect = 4.250e-30
Identity = 80/238 (33.61%), Postives = 127/238 (53.36%), Query Frame = 0
Query:  116 DSEREELRVAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASINIVKGPSQT-EHAQFAVPSKTALEVVWENEVTQHWKQDLPLGGR---------PWTECRSTEECFRWLTS--GKVKYVVSFETRGKYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDSQCARHAVSHIRPLTLFLPMMIFVFPSLV-GVIIILCTHRRK 340
            DS   +  +A +L+R S++A  A+ +LFYE+AVVNFLFQQ+   I    G   T E  Q+ V   T LE +W N V        P G +         PW  C   +EC  W+      V++ VS+E  G+YL+  R  C+A++++ET   L+ FN+ W +N+R    ++ ++DR++++LR++GR+  L +      +C    +S I  L L LP+M+ V P L     + LC  R +
Sbjct:  336 DSFLTKFSLATSLFRISLIAFIAMFSLFYEVAVVNFLFQQQRIEIPKSIGQLSTLELRQYCVLKDTGLENIWNNTVN-------PTGRKFDGSDEKEIPWKRCVHAQECLDWVLDDDNPVQFFVSYEMEGRYLMHSRTNCEAVAIYETRETLHQFNSGWLFNERVPEKRRRELDRELMALRLNGRLTQLHN--GVGPRCQPDVISSIDYLILLLPVMVLVVPPLFFSAFVALCGRRNR 564          
The following BLAST results are available for this feature:
BLAST of Ggra5517.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J3887.140e-3526.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IE214.030e-3227.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4B84.250e-3033.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..335
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 336..359
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 154..314
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..132
NoneNo IPR availableTMHMMTMhelixcoord: 313..335
NoneNo IPR availableTMHMMTMhelixcoord: 60..82
NoneNo IPR availableTMHMMTMhelixcoord: 131..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:761207..762572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1Ggra5517.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 761207..762572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MAEKGYRFAINNGLVDLPSRRCSALAGAPLISDEIAIFGAVSSNASNLEQ
VGQLLRPFHVGTWLMLAMGFVVLIVLPLAIGAKYHWFLPSLRTTSPSLTT
ENDSGEDSNLVNGQSDSEREELRVAMTLYRSSVVAMFAILALFYEIAVVN
FLFQQRNASINIVKGPSQTEHAQFAVPSKTALEVVWENEVTQHWKQDLPL
GGRPWTECRSTEECFRWLTSGKVKYVVSFETRGKYLLSGRGECDAISMFE
TNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDS
QCARHAVSHIRPLTLFLPMMIFVFPSLVGVIIILCTHRRKREDAVERVEV
IPKAVEDED*
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