Ggra5517.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5517.t1
Unique NameGgra5517.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:761207..762572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5517Ggra5517Gracilaria gracilis GNS1m malegenetig00000842_pilon 761207..762572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1Ggra5517.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 761207..762572 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1.start1Ggra5517.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 761207..761209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1.CDS1Ggra5517.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 761207..761774 +
Ggra5517.t1.CDS2Ggra5517.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 761856..762017 +
Ggra5517.t1.CDS3Ggra5517.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 762143..762276 +
Ggra5517.t1.CDS4Ggra5517.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000842_pilon 762357..762572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1.exon1Ggra5517.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 761207..761774 +
Ggra5517.t1.exon2Ggra5517.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 761856..762017 +
Ggra5517.t1.exon3Ggra5517.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 762143..762276 +
Ggra5517.t1.exon4Ggra5517.t1.exon4Gracilaria gracilis GNS1m maleexontig00000842_pilon 762357..762572 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1.intron1Ggra5517.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 761775..761855 +
Ggra5517.t1.intron2Ggra5517.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 762018..762142 +
Ggra5517.t1.intron3Ggra5517.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000842_pilon 762277..762356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5517.t1.stop1Ggra5517.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 762570..762572 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MAEKGYRFAINNGLVDLPSRRCSALAGAPLISDEIAIFGAVSSNASNLEQ
VGQLLRPFHVGTWLMLAMGFVVLIVLPLAIGAKYHWFLPSLRTTSPSLTT
ENDSGEDSNLVNGQSDSEREELRVAMTLYRSSVVAMFAILALFYEIAVVN
FLFQQRNASINIVKGPSQTEHAQFAVPSKTALEVVWENEVTQHWKQDLPL
GGRPWTECRSTEECFRWLTSGKVKYVVSFETRGKYLLSGRGECDAISMFE
TNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDS
QCARHAVSHIRPLTLFLPMMIFVFPSLVGVIIILCTHRRKREDAVERVEV
IPKAVEDED*
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spliced messenger RNA

>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000842_pilon:761207..762572+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGAAGGGATATCGCTTCGCTATCAATAACGGACTGGTTGATTT
ACCTTCTCGCAGGTGTAGTGCCCTAGCTGGTGCGCCATTAATCTCTGACG
AAATAGCGATATTTGGCGCGGTGTCTTCAAACGCTAGCAATTTGGAACAA
GTCGGTCAATTGCTTCGTCCATTTCATGTGGGTACTTGGTTAATGCTCGC
AATGGGTTTTGTTGTTCTTATCGTACTCCCGCTGGCCATTGGAGCCAAAT
ACCATTGGTTCCTTCCTTCGTTGAGAACAACTAGCCCGTCCTTAACAACG
GAAAATGACAGTGGTGAAGATTCAAATTTGGTTAATGGACAAAGTGACTC
TGAAAGAGAAGAACTCCGAGTAGCAATGACATTGTATCGGTCGAGTGTTG
TGGCCATGTTTGCCATTCTGGCCCTTTTCTACGAGATCGCAGTGGTGAAT
TTTTTGTTTCAGCAAAGAAACGCTTCGATTAACATTGTGAAAGGCCCATC
ACAGACTGAACATGCTCAATTCGCAGTTCCCTCAAAGACTGCGTTAGAAG
TCGTCTGGGAAAACGAAGTCACGCAGCATTGGAAACAGGATCTGCCTCTT
GGAGGGAGGCCATGGACGGAATGCCGGTCAACGGAGGAATGCTTTCGGTG
GCTGACATCTGGAAAAGTGAAATATGTAGTGAGTTTCGAAACTCGTGGTA
AGTATCTACTTTCTGGACGAGGCGAATGTGATGCGATATCGATGTTTGAG
ACAAACAGAGAGTTGTATACTTTCAACGCAGTGTGGTACTACAATAAAAG
GTGTAGTACAGCCAAAAAGGGACAAGTGGACCGAGATATACTATCGCTCA
GAATGCACGGAAGGATGAAGTTATTATTTGACAAGCATTCTGAGGACTCC
CAATGTGCAAGGCATGCGGTGTCACACATACGACCATTAACGCTTTTCCT
TCCTATGATGATATTCGTGTTTCCATCGCTGGTTGGGGTTATAATAATCC
TCTGCACACACCGCAGAAAGCGTGAAGACGCAGTGGAACGGGTAGAGGTA
ATTCCGAAAGCAGTTGAAGATGAAGAttaa
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protein sequence of Ggra5517.t1

>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MAEKGYRFAINNGLVDLPSRRCSALAGAPLISDEIAIFGAVSSNASNLEQ
VGQLLRPFHVGTWLMLAMGFVVLIVLPLAIGAKYHWFLPSLRTTSPSLTT
ENDSGEDSNLVNGQSDSEREELRVAMTLYRSSVVAMFAILALFYEIAVVN
FLFQQRNASINIVKGPSQTEHAQFAVPSKTALEVVWENEVTQHWKQDLPL
GGRPWTECRSTEECFRWLTSGKVKYVVSFETRGKYLLSGRGECDAISMFE
TNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMHGRMKLLFDKHSEDS
QCARHAVSHIRPLTLFLPMMIFVFPSLVGVIIILCTHRRKREDAVERVEV
IPKAVEDED*
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mRNA from alignment at tig00000842_pilon:761207..762572+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1366bp|location=Sequence derived from alignment at tig00000842_pilon:761207..762572+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGAAGGGATATCGCTTCGCTATCAATAACGGACTGGTTGATTT
ACCTTCTCGCAGGTGTAGTGCCCTAGCTGGTGCGCCATTAATCTCTGACG
AAATAGCGATATTTGGCGCGGTGTCTTCAAACGCTAGCAATTTGGAACAA
GTCGGTCAATTGCTTCGTCCATTTCATGTGGGTACTTGGTTAATGCTCGC
AATGGGTTTTGTTGTTCTTATCGTACTCCCGCTGGCCATTGGAGCCAAAT
ACCATTGGTTCCTTCCTTCGTTGAGAACAACTAGCCCGTCCTTAACAACG
GAAAATGACAGTGGTGAAGATTCAAATTTGGTTAATGGACAAAGTGACTC
TGAAAGAGAAGAACTCCGAGTAGCAATGACATTGTATCGGTCGAGTGTTG
TGGCCATGTTTGCCATTCTGGCCCTTTTCTACGAGATCGCAGTGGTGAAT
TTTTTGTTTCAGCAAAGAAACGCTTCGATTAACATTGTGAAAGGCCCATC
ACAGACTGAACATGCTCAATTCGCAGTTCCCTCAAAGACTGCGTTAGAAG
TCGTCTGGGAAAACGAAGGTATGGTCACAGATTCAGCTTTCGGACATGCC
TTTTAAGACATTATTGAACCTTAAGTCTAACATTTGCTTTTTGAAACAGT
CACGCAGCATTGGAAACAGGATCTGCCTCTTGGAGGGAGGCCATGGACGG
AATGCCGGTCAACGGAGGAATGCTTTCGGTGGCTGACATCTGGAAAAGTG
AAATATGTAGTGAGTTTCGAAACTCGTGGTAAGTATCTACTTTCTGGACG
AGGCGAATGTGGTACGTTTGCGCGTCTTTACTCGATGGGGAAGCGTTTAG
CTCGATTTTATTGAAAAGGACGAACTTCGATACAGATATGCTAATATGAC
ATATGTGTTCCTGATTGTTGCGCTCATGGCTTCCAGATGCGATATCGATG
TTTGAGACAAACAGAGAGTTGTATACTTTCAACGCAGTGTGGTACTACAA
TAAAAGGTGTAGTACAGCCAAAAAGGGACAAGTGGACCGAGATATACTAT
CGCTCAGAATGCACGGAAGGGTAAGTTGGTTACACCAATTCCTGTGTTGT
TGGAGTGGACAGTACAATAAAACAGACGCTGACAGTGATTGCATGTGTAG
ATGAAGTTATTATTTGACAAGCATTCTGAGGACTCCCAATGTGCAAGGCA
TGCGGTGTCACACATACGACCATTAACGCTTTTCCTTCCTATGATGATAT
TCGTGTTTCCATCGCTGGTTGGGGTTATAATAATCCTCTGCACACACCGC
AGAAAGCGTGAAGACGCAGTGGAACGGGTAGAGGTAATTCCGAAAGCAGT
TGAAGATGAAGAttaa
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Coding sequence (CDS) from alignment at tig00000842_pilon:761207..762572+

>Ggra5517.t1 ID=Ggra5517.t1|Name=Ggra5517.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000842_pilon:761207..762572+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGAAGGGATATCGCTTCGCTATCAATAACGGACTGGTTGATTT
ACCTTCTCGCAGGTGTAGTGCCCTAGCTGGTGCGCCATTAATCTCTGACG
AAATAGCGATATTTGGCGCGGTGTCTTCAAACGCTAGCAATTTGGAACAA
GTCGGTCAATTGCTTCGTCCATTTCATGTGGGTACTTGGTTAATGCTCGC
AATGGGTTTTGTTGTTCTTATCGTACTCCCGCTGGCCATTGGAGCCAAAT
ACCATTGGTTCCTTCCTTCGTTGAGAACAACTAGCCCGTCCTTAACAACG
GAAAATGACAGTGGTGAAGATTCAAATTTGGTTAATGGACAAAGTGACTC
TGAAAGAGAAGAACTCCGAGTAGCAATGACATTGTATCGGTCGAGTGTTG
TGGCCATGTTTGCCATTCTGGCCCTTTTCTACGAGATCGCAGTGGTGAAT
TTTTTGTTTCAGCAAAGAAACGCTTCGATTAACATTGTGAAAGGCCCATC
ACAGACTGAACATGCTCAATTCGCAGTTCCCTCAAAGACTGCGTTAGAAG
TCGTCTGGGAAAACGAAGTCACGCAGCATTGGAAACAGGATCTGCCTCTT
GGAGGGAGGCCATGGACGGAATGCCGGTCAACGGAGGAATGCTTTCGGTG
GCTGACATCTGGAAAAGTGAAATATGTAGTGAGTTTCGAAACTCGTGGTA
AGTATCTACTTTCTGGACGAGGCGAATGTGATGCGATATCGATGTTTGAG
ACAAACAGAGAGTTGTATACTTTCAACGCAGTGTGGTACTACAATAAAAG
GTGTAGTACAGCCAAAAAGGGACAAGTGGACCGAGATATACTATCGCTCA
GAATGCACGGAAGGATGAAGTTATTATTTGACAAGCATTCTGAGGACTCC
CAATGTGCAAGGCATGCGGTGTCACACATACGACCATTAACGCTTTTCCT
TCCTATGATGATATTCGTGTTTCCATCGCTGGTTGGGGTTATAATAATCC
TCTGCACACACCGCAGAAAGCGTGAAGACGCAGTGGAACGGGTAGAGGTA
ATTCCGAAAGCAGTTGAAGATGAAGAttaa
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