Ggra5499.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5499.t1
Unique NameGgra5499.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Homology
BLAST of Ggra5499.t1 vs. uniprot
Match: R7QA83 (ArfX1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QA83_CHOCR)

HSP 1 Score: 357 bits (916), Expect = 2.420e-124
Identity = 176/190 (92.63%), Postives = 184/190 (96.84%), Query Frame = 0
Query:    1 MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLKLYGY 190
            MG+ALSACTGRPGGKD DLPCVLLVGLDGSGTTTILYQVKHG+KLETIPTLGMNKE+VKVD MDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDP+RLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQD+ +AV+ID VA DLELHDLPVRNYKVLPTVATDGTNLR+G KWMVDQLKLYGY
Sbjct:    1 MGSALSACTGRPGGKDGDLPCVLLVGLDGSGTTTILYQVKHGKKLETIPTLGMNKEIVKVDGMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPNRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDVADAVSIDTVAKDLELHDLPVRNYKVLPTVATDGTNLREGLKWMVDQLKLYGY 190          
BLAST of Ggra5499.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB82 (LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB82)

HSP 1 Score: 273 bits (699), Expect = 4.220e-91
Identity = 138/189 (73.02%), Postives = 158/189 (83.60%), Query Frame = 0
Query:    1 MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLKLYG 189
            MG  LS C G+   +D  LP VLLVGLDG+GTTTILYQ+K G K+ETIPTLG+NKEVV V  +DFELYDVGGLEKVRALWRTYSKEANGVAYVVD+SD  RLPQA+EELK+LFFGD+KKKSLIVPDIPLLVLANK D+  A+ +DQ+   L+L DLPVR YKVLP+VAT+G NL++GF WMV QL  YG
Sbjct:    1 MGQILSLCMGQS--RDYKLPVVLLVGLDGTGTTTILYQLKQGHKVETIPTLGLNKEVVTVGDIDFELYDVGGLEKVRALWRTYSKEANGVAYVVDASDSRRLPQASEELKRLFFGDRKKKSLIVPDIPLLVLANKMDVDGALDVDQIEAALDLQDLPVRRYKVLPSVATEGRNLKEGFLWMVAQLHEYG 187          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A1X6P3E7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3E7_PORUM)

HSP 1 Score: 191 bits (486), Expect = 5.220e-59
Identity = 93/165 (56.36%), Postives = 126/165 (76.36%), Query Frame = 0
Query:   22 VLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
            +LL+GLDGSG TTILYQ+  GR+LETIPTLG N EV++ D ++FEL+D+GGL+K+R LWR YS+EANG+ +VVDS+D SR P+AAEELKK FFGD  ++S ++PD PLLV ANKQD+  A ++ ++   L+L  LPVR++KV+P     G +L  G  WM  +L+
Sbjct:   18 LLLLGLDGSGATTILYQMVLGRRLETIPTLGFNHEVIRYDGLEFELWDIGGLDKMRPLWRQYSREANGIIFVVDSADRSRFPKAAEELKK-FFGDGGRRSFVLPDNPLLVFANKQDVNGAASVPEIEEVLDLSSLPVRSFKVVPCCGRTGASLGIGLDWMTAELQ 181          
BLAST of Ggra5499.t1 vs. uniprot
Match: R7QEX2 (ArfX2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX2_CHOCR)

HSP 1 Score: 161 bits (408), Expect = 4.690e-47
Identity = 88/186 (47.31%), Postives = 123/186 (66.13%), Query Frame = 0
Query:    1 MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
            MGA +SA   R  G       VL++GLDG+G TTILYQ+  G++LETIPTLG+N+E V VD ++ E +D+GGL++VR LWR YS++A+ V +VVDSSD  RL  A+ EL  L+ G  K+ S I  D PLL+ ANKQD P AV+  QV   L+++ + V  +++ P  A +  +L  G  W+V +LK
Sbjct:    1 MGACMSASHFRHAGSRG----VLVLGLDGAGATTILYQLVLGKRLETIPTLGLNQESVTVDGLELECWDIGGLDQVRTLWRQYSRDADAVIFVVDSSDVERLKLASTELASLYKGHSKRNS-IQHDRPLLIFANKQDTPTAVSTQQVEKVLKVNYIHVDTFRIFPCSANNRESLMKGINWLVTELK 181          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A7S2ZXC9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZXC9_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 2.600e-46
Identity = 75/172 (43.60%), Postives = 121/172 (70.35%), Query Frame = 0
Query:   15 KDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
             D ++  +L++GLDG+G+TTILY++   + ++TIPTLG+N+E +    +D++++D+GGL+K+R LW+ YS+  +   +V+D++D  R   AA+EL+  FF D   KS  +P  PLLV ANK+DLP+A+T  ++   L+L +LPV NYK++P     G NLR+G +W+ D+LK
Sbjct:   11 SDGNVKSLLMIGLDGAGSTTILYRLVLNKCIDTIPTLGVNQESLSFGGIDYDIWDMGGLDKMRPLWKQYSRATDAYIFVLDAADQERAILAADELES-FFDDIDLKSHEIPGDPLLVYANKKDLPDAMTTSEIENMLKLPELPVSNYKIVPCCGKTGENLREGLEWLTDELK 181          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A5J4YKF8 (ADP-ribosylation factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKF8_PORPP)

HSP 1 Score: 154 bits (388), Expect = 5.910e-44
Identity = 83/183 (45.36%), Postives = 117/183 (63.93%), Query Frame = 0
Query:   11 RPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDK------KKKSL--IVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQL 185
            R GGK      +LL+GLDG+G TT+ YQ   G+ + T+PT+G NKE +K +   ++ +DVGG   VR  WR Y+K A+ + +VVD+ D SR+P+AAE LKKLFFG+       K KS+     DIPLLVLANKQDL + +  D++   L+L  LPVR+  V+PT A +G N++    W+  +L
Sbjct:   19 RTGGKG-----ILLIGLDGAGKTTVCYQFLLGKHVHTVPTMGHNKETLKHEGKKYDFFDVGGSMLVRETWRLYAKAADCIIFVVDAHDRSRIPEAAESLKKLFFGEDYEAAAAKSKSVNSTAYDIPLLVLANKQDLADPMNSDEIEKALDLASLPVRSRIVIPTDAKNGENIQAALMWLTGEL 196          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A7S0BQY1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQY1_9RHOD)

HSP 1 Score: 153 bits (386), Expect = 7.580e-44
Identity = 74/172 (43.02%), Postives = 110/172 (63.95%), Query Frame = 0
Query:   15 KDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
            K  +   +LL+G+DG+G+TT+LYQ+    ++ETIPTL  N+E +  + M +E++D+GG +KVR LW  Y++EA+ + YVVD++D +RLP AA ELK LF  D +         PLL+ ANKQ++  A  +D++   L +  LP  NYK++   A  G NL DG  W+  QLK
Sbjct:   10 KQANHRSLLLLGIDGAGSTTVLYQLVQHERVETIPTLAFNRETLAFEGMKYEIWDIGGNDKVRPLWTKYAREAHAIIYVVDATDKTRLPMAARELK-LFIDDSENNHYPTSKNPLLIFANKQEMDGAKNVDEMREALGMDSLPFTNYKIVGCSAKTGDNLNDGLHWLTQQLK 180          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A2V3IL58 (ADP-ribosylation factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL58_9FLOR)

HSP 1 Score: 152 bits (384), Expect = 2.170e-43
Identity = 85/165 (51.52%), Postives = 111/165 (67.27%), Query Frame = 0
Query:   22 VLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
            VL++GLDG+GTTTILYQ+  G++LETIPTLG+N E V+ D +  + +DVGGL+KVR LWR   K+A+ V +VVDS+D  R+  AAEEL KL+  D    S  + D PLLV ANKQDL +A +I  V   L +  L V   KVLP+ A D  +L  G +W+  QLK
Sbjct:   16 VLVLGLDGAGTTTILYQLVLGKRLETIPTLGVNHEKVQADGLQLDCWDVGGLDKVRPLWRQCFKDADAVIFVVDSTDLPRMRLAAEELAKLYRTDSST-SAAMKDRPLLVFANKQDLRDAASIKMVEKVLRIEALNVTCTKVLPSSANDRQSLVKGVQWLTAQLK 179          
BLAST of Ggra5499.t1 vs. uniprot
Match: A0A7S1EUU0 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUU0_9RHOD)

HSP 1 Score: 150 bits (378), Expect = 1.090e-42
Identity = 76/176 (43.18%), Postives = 111/176 (63.07%), Query Frame = 0
Query:   11 RPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLK 186
            RP G       VL++GLDG+G+TT++YQ+  G+K++TIPTLG N E VK + M+ E++D+GG+EKVR +WR Y+ EA+ + +VVD +D +R PQA EEL+K F+ D  +K      IPLL+  NK DLP  V I  +  +L     PV  Y+ +      G N+  G  W+ ++LK
Sbjct:   10 RPSGSSRS---VLMLGLDGAGSTTVMYQIVLGKKVDTIPTLGFNHETVKYNGMELEMFDLGGVEKVRPVWRQYASEADAIIFVVDGNDSARFPQAREELQK-FYSDIDQKR-----IPLLLFLNKTDLPNCVDIPTLEAELNPSQFPVSCYQTMVCCGKTGENISAGLDWLTEKLK 176          
BLAST of Ggra5499.t1 vs. uniprot
Match: ADP-ribosylation factor 4-like n=2 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019559930 (ADP-ribosylation factor 4-like n=2 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019559930)

HSP 1 Score: 148 bits (373), Expect = 7.400e-42
Identity = 76/164 (46.34%), Postives = 106/164 (64.63%), Query Frame = 0
Query:   22 VLLVGLDGSGTTTILYQVKHGRKLETIPTLGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPSRLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATDLELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQL 185
            +L+VGLD +G TTILY++K G  + +IPT+G N E V+   + F ++DVGG   +R LWR Y +   G+ +VVDSSDP R+  AAEELK +   D+ +      D+ LLVLANKQDLP+A+T+ ++   L LH L  R + V PT A  G+ L +G  W+ DQL
Sbjct:   20 LLMVGLDAAGKTTILYKLKLGEVVSSIPTIGFNVETVEYKNISFTVWDVGGQSVIRGLWRHYYQNTEGLIFVVDSSDPERIETAAEELKLMMEEDEMR------DVVLLVLANKQDLPKAMTVSELTDRLGLHTLRGRQWFVQPTCAVQGSGLYEGLDWLSDQL 177          
The following BLAST results are available for this feature:
BLAST of Ggra5499.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QA832.420e-12492.63ArfX1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 Rep... [more]
LOW QUALITY PROTEIN: ADP-ribosylation factor 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB824.220e-9173.02LOW QUALITY PROTEIN: ADP-ribosylation factor 6-lik... [more]
A0A1X6P3E75.220e-5956.36Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QEX24.690e-4747.31ArfX2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7... [more]
A0A7S2ZXC92.600e-4643.60Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YKF85.910e-4445.36ADP-ribosylation factor n=1 Tax=Porphyridium purpu... [more]
A0A7S0BQY17.580e-4443.02Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IL582.170e-4351.52ADP-ribosylation factor n=1 Tax=Gracilariopsis cho... [more]
A0A7S1EUU01.090e-4243.18Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
ADP-ribosylation factor 4-like n=2 Tax=Pimephales promelas TaxID=90988 RepID=UPI00195599307.400e-4246.34ADP-ribosylation factor 4-like n=2 Tax=Pimephales ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 21..44
score: 41.18
coord: 49..73
score: 29.41
coord: 159..183
score: 22.12
coord: 76..101
score: 36.2
IPR006689Small GTPase superfamily, ARF/SAR typeSMARTSM00178sar_sub_1coord: 1..185
e-value: 1.6E-7
score: 41.0
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 22..184
e-value: 2.9E-45
score: 153.9
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..189
e-value: 2.3E-40
score: 150.1
NoneNo IPR availablePANTHERPTHR11711:SF381ADP-RIBOSYLATION FACTOR 1coord: 22..184
NoneNo IPR availablePROSITEPS51417ARFcoord: 13..185
score: 15.515772
NoneNo IPR availableCDDcd00878Arf_Arlcoord: 21..184
e-value: 1.14182E-54
score: 168.909
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 14..188
e-value: 6.5E-49
score: 167.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 20..185
IPR024156Small GTPase superfamily, ARF typePANTHERPTHR11711ADP RIBOSYLATION FACTOR-RELATEDcoord: 22..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:604915..605490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1Ggra5499.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 604915..605490 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPT
LGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPS
RLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATD
LELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLKLYGYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF