Ggra5499.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5499.t1
Unique NameGgra5499.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:604915..605490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000004560
Preferred namearf5
PFAMsArf
Max annot lvl33208|Metazoa
KEGG koko:K07937,ko:K07939,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
GOsGO:0000003,GO:0001505,GO:0001654,GO:0003006,GO:0003674,GO:0003824,GO:0003956,GO:0006464,GO:0006471,GO:0006807,GO:0006810,GO:0006836,GO:0006897,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007423,GO:0008150,GO:0008152,GO:0009790,GO:0009792,GO:0009987,GO:0016192,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0023061,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0036211,GO:0036465,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044703,GO:0046903,GO:0048468,GO:0048488,GO:0048513,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0065007,GO:0065008,GO:0071704,GO:0098657,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901564
Evalue5.53e-43
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota,38BDM@33154|Opisthokonta,3BC0T@33208|Metazoa,3CRK7@33213|Bilateria,482HX@7711|Chordata,48W0X@7742|Vertebrata,49Z9I@7898|Actinopterygii
DescriptionBelongs to the small GTPase superfamily. Arf family
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5499Ggra5499Gracilaria gracilis GNS1m malegenetig00000842_pilon 604915..605490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1.stop1Ggra5499.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 604915..604917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1.CDS1Ggra5499.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 604915..605490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1.exon1Ggra5499.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 604915..605490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1.start1Ggra5499.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 605488..605490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5499.t1Ggra5499.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 604915..605490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPT
LGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPS
RLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATD
LELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLKLYGYS*
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spliced messenger RNA

>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000842_pilon:604915..605490- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGCTCTAAGCGCTTGCACCGGCCGCCCCGGCGGAAAGGACAC
CGATTTGCCGTGCGTGCTCCTCGTCGGATTAGACGGCTCCGGCACCACCA
CTATCCTCTACCAGGTCAAGCACGGCAGGAAGCTGGAGACCATACCCACC
CTCGGCATGAACAAGGAAGTGGTCAAGGTCGACACCATGGACTTTGAGCT
GTATGACGTAGGCGGGCTCGAGAAGGTGCGCGCTCTGTGGCGCACCTACA
GCAAGGAGGCCAACGGCGTCGCCTATGTCGTCGATTCCTCCGATCCCAGC
CGCCTTCCCCAGGCTGCCGAGGAACTCAAAAAGCTCTTCTTCGGCGATAA
GAAGAAGAAGAGCCTCATCGTCCCCGACATCCCGTTGCTAGTGCTCGCCA
ACAAGCAAGACCTGCCCGAAGCCGTTACCATTGATCAGGTAGCCACCGAC
TTGGAGCTGCATGACCTCCCCGTCCGCAACTACAAGGTTCTCCCCACCGT
CGCTACCGATGGTACAAATCTGCGAGACGGCTTCAAGTGGATGGTTGACC
AACTCAAGCTTTACGGCTACTCGTGA
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protein sequence of Ggra5499.t1

>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MGAALSACTGRPGGKDTDLPCVLLVGLDGSGTTTILYQVKHGRKLETIPT
LGMNKEVVKVDTMDFELYDVGGLEKVRALWRTYSKEANGVAYVVDSSDPS
RLPQAAEELKKLFFGDKKKKSLIVPDIPLLVLANKQDLPEAVTIDQVATD
LELHDLPVRNYKVLPTVATDGTNLRDGFKWMVDQLKLYGYS*
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mRNA from alignment at tig00000842_pilon:604915..605490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000842_pilon:604915..605490- (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCTCTAAGCGCTTGCACCGGCCGCCCCGGCGGAAAGGACAC
CGATTTGCCGTGCGTGCTCCTCGTCGGATTAGACGGCTCCGGCACCACCA
CTATCCTCTACCAGGTCAAGCACGGCAGGAAGCTGGAGACCATACCCACC
CTCGGCATGAACAAGGAAGTGGTCAAGGTCGACACCATGGACTTTGAGCT
GTATGACGTAGGCGGGCTCGAGAAGGTGCGCGCTCTGTGGCGCACCTACA
GCAAGGAGGCCAACGGCGTCGCCTATGTCGTCGATTCCTCCGATCCCAGC
CGCCTTCCCCAGGCTGCCGAGGAACTCAAAAAGCTCTTCTTCGGCGATAA
GAAGAAGAAGAGCCTCATCGTCCCCGACATCCCGTTGCTAGTGCTCGCCA
ACAAGCAAGACCTGCCCGAAGCCGTTACCATTGATCAGGTAGCCACCGAC
TTGGAGCTGCATGACCTCCCCGTCCGCAACTACAAGGTTCTCCCCACCGT
CGCTACCGATGGTACAAATCTGCGAGACGGCTTCAAGTGGATGGTTGACC
AACTCAAGCTTTACGGCTACTCGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:604915..605490-

>Ggra5499.t1 ID=Ggra5499.t1|Name=Ggra5499.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000842_pilon:604915..605490- (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCTCTAAGCGCTTGCACCGGCCGCCCCGGCGGAAAGGACAC
CGATTTGCCGTGCGTGCTCCTCGTCGGATTAGACGGCTCCGGCACCACCA
CTATCCTCTACCAGGTCAAGCACGGCAGGAAGCTGGAGACCATACCCACC
CTCGGCATGAACAAGGAAGTGGTCAAGGTCGACACCATGGACTTTGAGCT
GTATGACGTAGGCGGGCTCGAGAAGGTGCGCGCTCTGTGGCGCACCTACA
GCAAGGAGGCCAACGGCGTCGCCTATGTCGTCGATTCCTCCGATCCCAGC
CGCCTTCCCCAGGCTGCCGAGGAACTCAAAAAGCTCTTCTTCGGCGATAA
GAAGAAGAAGAGCCTCATCGTCCCCGACATCCCGTTGCTAGTGCTCGCCA
ACAAGCAAGACCTGCCCGAAGCCGTTACCATTGATCAGGTAGCCACCGAC
TTGGAGCTGCATGACCTCCCCGTCCGCAACTACAAGGTTCTCCCCACCGT
CGCTACCGATGGTACAAATCTGCGAGACGGCTTCAAGTGGATGGTTGACC
AACTCAAGCTTTACGGCTACTCGTGA
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