Ggra5451.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5451.t1
Unique NameGgra5451.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length719
Homology
BLAST of Ggra5451.t1 vs. uniprot
Match: A0A2V3IZM6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZM6_9FLOR)

HSP 1 Score: 918 bits (2373), Expect = 0.000e+0
Identity = 457/681 (67.11%), Postives = 559/681 (82.09%), Query Frame = 0
Query:    1 MLRNVRFRGLTSVSESQIIHLFRTGDFDGAIRHFVKRPPEARSDNLYEVVIRACAQVPDSVAASTVFNSMSKPSQAAAANVVSALCRERNAHAAFHFLQALPSIGLAVDRRFVSAISRAAPNDRSLLTKLRKLRAVRTKQPLSSASQFFLQEGLNASDKKAPPPRTRRYAIQAVEMEQSLRAAVPNINAVERKWSLAQNEEPMRSDTAVLSAAISAFVACGGEGAVRAIHVLMSWVRTNLCEKESGLPKSTYTDNPSAMALLLTSATKAIAAASSIVPAVCLSAYDILTTLNIPLFESSLPLTGAHFKLLQHAGLSLDETQQRIERARRRHVQLDEQAFSMALGAILRCDARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPQMVTTLLSDMTETDIVPTAVTYGLIFSACVIPGDYRSTRRKYALPVTRWQQELRMMEDHMARAGVRHSPYSRLSLARAYAHLGIKSRALEQFEAYLRNSKSDSGNGNVVSSRMEIEDAFDQMIYNFAHCRECRPDGPKTAIHIYEQMRAHKFPPSGHILDSLLAAYVRMGDTHSAIDCAKEFVNHGSMTLSYTGIVHLLEALAELQDSDAWWSVRNLCVDNKDLLKLPELRPFVKEFIISFARRQQREVCNDMMSIAGIEVSDLDFIFRKKEFLRFRTQMSKRLCQQQE 681
            MLR    R   S+SE QI+HL R+GD+  A RHF KRPP ARS++LYE  IRACAQVPDSVAA  +F  M  P+Q AAA+V+SALCRER A AAF FL ALPS+GL++D+RF+SA+ R AP+D  L + LR LRAVRT+QPL+S++ FF+ E  N ++  + P  TRRYA Q  +ME +LRAA+PN+  V++KW LAQ++EPMRSD AVLSAAIS F+ACG +GA +AI VL+SW+R NL ++E+G  K TYT NPS MALLLT++TKAIAAAS  VP VCLSAYD LT + +PLF+SSLP TGA+FKLLQHAGLSL+ETQQRIERA+RRH+QLDEQAFSMALGAILRCD  L+ KLAAGKAWMDVMRSACIPLT+HTYNLFAGQLRYCN+P MVTTLLSDMT+T +VPTAVTYGLIFSACVIPGDYRS  RK+ALPV  WQQEL MME  M ++ V H+  SRLSLARAYAHLGIKSRAL +F+ YLR+S+        V SRME+EDA++QMIYNFAHCRECRPDGP++A+H++EQM  + F PSG ILDS+L A+VRMGDT  A++CAK F   GSMTLS++G+ HLL+ALAEL D++AWWSVR+LCVDN  L  +PE++  V++F++SFAR+QQR+VC+DMMSIAGIE+SDL++IF ++EFLRFR Q+S+R+ Q QE
Sbjct:    1 MLRQNSIRRFCSLSEPQIVHLLRSGDYHSAFRHFAKRPPHARSNDLYETAIRACAQVPDSVAAKALFKGMPDPTQTAAAHVISALCREREAQAAFRFLHALPSLGLSIDKRFISAVFRVAPSDHVLHSSLRALRAVRTRQPLASSAPFFIHEDENLAESPSKPHLTRRYAKQVADMEHALRAAIPNLKRVDKKWRLAQSKEPMRSDVAVLSAAISTFIACGRDGAEKAITVLVSWIRANLYDEEAGRAKQTYTANPSTMALLLTTSTKAIAAASPYVPDVCLSAYDALTAMKLPLFDSSLPYTGAYFKLLQHAGLSLEETQQRIERAKRRHIQLDEQAFSMALGAILRCDEHLSLKLAAGKAWMDVMRSACIPLTIHTYNLFAGQLRYCNNPDMVTTLLSDMTQTGLVPTAVTYGLIFSACVIPGDYRSGSRKHALPVNHWQQELEMMEKRMHKSSVGHTRNSRLSLARAYAHLGIKSRALAEFDEYLRSSQK--AEAETVVSRMEVEDAYNQMIYNFAHCRECRPDGPQSAVHLFEQMEKNGFAPSGLILDSMLVAFVRMGDTQRAVECAKSFAVRGSMTLSHSGLTHLLQALAELHDAEAWWSVRSLCVDNAHLFTVPEVKQSVQQFVMSFARKQQRDVCDDMMSIAGIEISDLEYIFSRREFLRFRRQISRRVHQNQE 679          
BLAST of Ggra5451.t1 vs. uniprot
Match: R7Q4N3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4N3_CHOCR)

HSP 1 Score: 399 bits (1024), Expect = 5.100e-129
Identity = 202/396 (51.01%), Postives = 280/396 (70.71%), Query Frame = 0
Query:  282 LSAYDILTTLNIPLFESSLPLTGAHFKLLQHAGLSLDETQQRIERARRRHVQLDEQAFSMALGAILRCDARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPQMVTTLLSDMTETDIVPTAVTYGLIFSACVIPGDYRSTRRKYALPVTRWQQELRMMEDHMARAGVRHSPYSRLSLARAYAHLGIKSRALEQFEAYLRNSKSDSGNGNVVSSRMEIEDAFDQMIYNFAHCRECRPDGPKTAIHIYEQMRAHKFPPSGHILDSLLAAYVRMGDTHSAIDCAKEFVNHGS-MTLSYTGIVHLLEALAELQDSDAWWSVRNLCVDNKDLLKLPELRPFVKEFIISFARRQQREVCNDMMSIAGIEVSDLDFIFRKKEFLRFRTQMSKRL 676
            LSA+D L  + +P F +SLP+ G++FK+LQHAGLSL ET+ RI+  +  H+QLDEQ FSMALGAILRCD R+ DKLAAGK W+  MR A IPLTV TYNLFAGQLRYCNDP+MV++LLSDMT   +VPT VTYGL+FSACVIPG Y S  R+ AL VT W+  L+ M +HMA +GV H+  SRLSLARAYAHLG+   A+E+FE +L  S+   G+    +S+ E+EDA+ QM++NFAHCRE   DGP+  + +YE+M+  +     H +D +L   VR G+   A++ A++ V     + L+ +G+ HLL A  E+ D+  W   R L +++ ++L +P+L   V++ +ISFARRQ  +VC D+M +A IE+ DL+++ R +EF RFR + S+++
Sbjct:    3 LSAFDALWRMELPGFSTSLPIAGSYFKVLQHAGLSLSETRDRIDSLKEHHIQLDEQGFSMALGAILRCDERVLDKLAAGKEWVQKMRQAGIPLTVQTYNLFAGQLRYCNDPEMVSSLLSDMTTAGVVPTPVTYGLVFSACVIPGAYTSPSRRRALSVTMWESVLQAMSEHMAVSGVVHTANSRLSLARAYAHLGLTGPAMEEFEIFL--SQRGDGDFKSAASQREVEDAYFQMMFNFAHCREGSSDGPEMVMTLYERMKEERVAVPRHAIDCVLVGCVRKGEGERALEYARDAVAADPHLRLTVSGLKHLLMAHVEVCDAMYWERTRKLVLNSSEILGMPQLAHIVEKVVISFARRQSMDVCKDIMLMANIEMKDLEYVVRGREFTRFRDRGSQQV 396          
The following BLAST results are available for this feature:
BLAST of Ggra5451.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZM60.000e+067.11Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q4N35.100e-12951.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 310..337
NoneNo IPR availablePANTHERPTHR47934PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIALcoord: 327..485
coord: 439..579
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 512..619
e-value: 1.2E-5
score: 26.9
coord: 313..511
e-value: 8.9E-14
score: 53.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:337757..340013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5451.t1Ggra5451.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 337757..340013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MLRNVRFRGLTSVSESQIIHLFRTGDFDGAIRHFVKRPPEARSDNLYEVV
IRACAQVPDSVAASTVFNSMSKPSQAAAANVVSALCRERNAHAAFHFLQA
LPSIGLAVDRRFVSAISRAAPNDRSLLTKLRKLRAVRTKQPLSSASQFFL
QEGLNASDKKAPPPRTRRYAIQAVEMEQSLRAAVPNINAVERKWSLAQNE
EPMRSDTAVLSAAISAFVACGGEGAVRAIHVLMSWVRTNLCEKESGLPKS
TYTDNPSAMALLLTSATKAIAAASSIVPAVCLSAYDILTTLNIPLFESSL
PLTGAHFKLLQHAGLSLDETQQRIERARRRHVQLDEQAFSMALGAILRCD
ARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPQMVTTLLS
DMTETDIVPTAVTYGLIFSACVIPGDYRSTRRKYALPVTRWQQELRMMED
HMARAGVRHSPYSRLSLARAYAHLGIKSRALEQFEAYLRNSKSDSGNGNV
VSSRMEIEDAFDQMIYNFAHCRECRPDGPKTAIHIYEQMRAHKFPPSGHI
LDSLLAAYVRMGDTHSAIDCAKEFVNHGSMTLSYTGIVHLLEALAELQDS
DAWWSVRNLCVDNKDLLKLPELRPFVKEFIISFARRQQREVCNDMMSIAG
IEVSDLDFIFRKKEFLRFRTQMSKRLCQQQEEAELNGLYPVSGVPYVITK
SDEDSTTSARSIAISWFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf