Ggra5451.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5451.t1
Unique Name	Ggra5451.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	719

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:337757..340013 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5451	Ggra5451	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 337757..340013 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1	Ggra5451.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 337757..340013 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1.stop1	Ggra5451.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 337757..337759 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1.CDS1	Ggra5451.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 337757..337849 -
Ggra5451.t1.CDS2	Ggra5451.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 337950..340013 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1.exon1	Ggra5451.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 337757..337849 -
Ggra5451.t1.exon2	Ggra5451.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 337950..340013 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1.intron1	Ggra5451.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000842_pilon 337850..337949 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5451.t1.start1	Ggra5451.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 340011..340013 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:337757..340013-
coding sequence from alignment at tig00000842_pilon:337757..340013-

mRNA sequence

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=719bp
MLRNVRFRGLTSVSESQIIHLFRTGDFDGAIRHFVKRPPEARSDNLYEVV
IRACAQVPDSVAASTVFNSMSKPSQAAAANVVSALCRERNAHAAFHFLQA
LPSIGLAVDRRFVSAISRAAPNDRSLLTKLRKLRAVRTKQPLSSASQFFL
QEGLNASDKKAPPPRTRRYAIQAVEMEQSLRAAVPNINAVERKWSLAQNE
EPMRSDTAVLSAAISAFVACGGEGAVRAIHVLMSWVRTNLCEKESGLPKS
TYTDNPSAMALLLTSATKAIAAASSIVPAVCLSAYDILTTLNIPLFESSL
PLTGAHFKLLQHAGLSLDETQQRIERARRRHVQLDEQAFSMALGAILRCD
ARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPQMVTTLLS
DMTETDIVPTAVTYGLIFSACVIPGDYRSTRRKYALPVTRWQQELRMMED
HMARAGVRHSPYSRLSLARAYAHLGIKSRALEQFEAYLRNSKSDSGNGNV
VSSRMEIEDAFDQMIYNFAHCRECRPDGPKTAIHIYEQMRAHKFPPSGHI
LDSLLAAYVRMGDTHSAIDCAKEFVNHGSMTLSYTGIVHLLEALAELQDS
DAWWSVRNLCVDNKDLLKLPELRPFVKEFIISFARRQQREVCNDMMSIAG
IEVSDLDFIFRKKEFLRFRTQMSKRLCQQQEEAELNGLYPVSGVPYVITK
SDEDSTTSARSIAISWFA*

spliced messenger RNA

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000842_pilon:337757..340013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCAATGTCCGGTTCCGCGGTCTGACATCTGTCTCTGAATCGCA
AATAATCCATCTCTTTCGCACCGGTGACTTCGATGGCGCAATACGCCACT
TCGTCAAGCGGCCACCCGAAGCACGTTCCGATAATCTCTACGAGGTTGTG
ATCCGCGCCTGTGCTCAGGTGCCGGATTCGGTCGCAGCCAGTACCGTGTT
CAACAGCATGTCGAAACCCTCTCAAGCAGCCGCCGCAAATGTTGTTTCCG
CCTTGTGCAGAGAACGAAATGCTCACGCTGCGTTCCACTTTCTACAGGCT
CTTCCCTCCATAGGATTGGCTGTTGACCGTCGTTTTGTCTCCGCTATATC
TCGAGCTGCTCCTAACGATCGTTCACTACTAACTAAACTCCGCAAACTGC
GAGCCGTGCGTACAAAGCAACCGCTATCATCGGCGTCTCAATTTTTCCTA
CAAGAGGGCTTAAATGCTTCTGACAAAAAGGCTCCACCTCCTCGCACACG
CCGCTACGCCATTCAAGCCGTGGAGATGGAACAATCGCTGCGTGCGGCCG
TCCCTAATATTAACGCTGTGGAACGGAAATGGAGTCTTGCTCAGAATGAA
GAACCAATGCGCTCTGACACTGCTGTGTTGTCGGCAGCTATCTCCGCCTT
CGTGGCATGCGGTGGTGAAGGTGCAGTTAGAGCTATACACGTTCTCATGA
GTTGGGTCAGAACAAACCTGTGTGAGAAGGAATCTGGTCTACCAAAGTCC
ACATACACTGACAATCCGTCAGCTATGGCGTTGCTGCTCACCTCTGCCAC
CAAGGCCATTGCAGCCGCTTCATCGATTGTACCCGCAGTTTGTCTTTCTG
CGTATGACATATTGACAACCCTGAATATACCGCTCTTTGAGAGCAGTTTG
CCATTGACAGGCGCGCACTTCAAACTCCTACAGCATGCAGGTCTTTCGCT
CGACGAGACGCAACAGCGCATTGAACGTGCCAGGCGTCGTCACGTCCAGT
TAGATGAACAAGCGTTTTCTATGGCACTTGGAGCAATTCTACGCTGCGAC
GCTCGCTTGAACGACAAACTCGCTGCTGGAAAAGCGTGGATGGATGTAAT
GCGAAGTGCTTGCATTCCTCTTACCGTACACACGTACAACTTATTCGCAG
GTCAGCTGCGATATTGTAACGATCCGCAAATGGTGACCACGTTGCTTTCC
GACATGACAGAAACAGACATTGTTCCAACTGCCGTCACCTACGGCCTGAT
ATTCAGTGCTTGTGTGATTCCAGGTGATTATAGATCCACAAGGAGAAAAT
ATGCGTTACCCGTAACTCGCTGGCAACAGGAGCTTAGAATGATGGAAGAT
CACATGGCCAGAGCTGGGGTAAGGCATTCTCCTTATTCGCGTCTTTCACT
AGCAAGAGCTTACGCCCACTTGGGAATTAAGTCAAGGGCGTTAGAACAAT
TCGAAGCTTACCTGAGAAACTCTAAGTCAGATTCAGGTAACGGAAACGTC
GTATCATCTCGCATGGAGATTGAGGATGCTTTTGATCAGATGATATACAA
CTTTGCCCATTGTCGAGAATGTAGACCAGATGGACCCAAGACGGCAATAC
ATATTTATGAGCAAATGAGGGCGCATAAGTTTCCCCCATCCGGGCACATC
CTCGACTCACTATTAGCTGCATACGTCAGGATGGGAGACACCCACAGTGC
GATAGATTGTGCAAAGGAGTTTGTCAACCACGGAAGCATGACCCTGTCGT
ACACAGGAATTGTCCATCTCCTGGAAGCTCTTGCTGAGCTCCAAGACTCG
GACGCGTGGTGGAGCGTACGAAATCTCTGCGTGGATAACAAAGACTTGTT
GAAGTTACCCGAACTTCGGCCCTTTGTCAAAGAATTTATTATCAGCTTTG
CCAGGCGCCAACAGCGAGAAGTTTGTAACGACATGATGTCAATTGCTGGT
ATTGAAGTTTCCGATCTCGATTTCATCTTCAGGAAGAAAGAGTTCCTTCG
TTTCCGAACTCAGATGTCCAAGAGATTGTGCCAGCAACAAGAGGAAGCAG
AACTGAATGGCCTTTACCCGGTTAGTGGTGTCCCCTATGTGATCACCAAG
AGTGATGAAGACAGTACTACTTCTGCGAGAAGTATAGCCATCTCATGGTT
TGCCTAG

protein sequence of Ggra5451.t1

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MLRNVRFRGLTSVSESQIIHLFRTGDFDGAIRHFVKRPPEARSDNLYEVV
IRACAQVPDSVAASTVFNSMSKPSQAAAANVVSALCRERNAHAAFHFLQA
LPSIGLAVDRRFVSAISRAAPNDRSLLTKLRKLRAVRTKQPLSSASQFFL
QEGLNASDKKAPPPRTRRYAIQAVEMEQSLRAAVPNINAVERKWSLAQNE
EPMRSDTAVLSAAISAFVACGGEGAVRAIHVLMSWVRTNLCEKESGLPKS
TYTDNPSAMALLLTSATKAIAAASSIVPAVCLSAYDILTTLNIPLFESSL
PLTGAHFKLLQHAGLSLDETQQRIERARRRHVQLDEQAFSMALGAILRCD
ARLNDKLAAGKAWMDVMRSACIPLTVHTYNLFAGQLRYCNDPQMVTTLLS
DMTETDIVPTAVTYGLIFSACVIPGDYRSTRRKYALPVTRWQQELRMMED
HMARAGVRHSPYSRLSLARAYAHLGIKSRALEQFEAYLRNSKSDSGNGNV
VSSRMEIEDAFDQMIYNFAHCRECRPDGPKTAIHIYEQMRAHKFPPSGHI
LDSLLAAYVRMGDTHSAIDCAKEFVNHGSMTLSYTGIVHLLEALAELQDS
DAWWSVRNLCVDNKDLLKLPELRPFVKEFIISFARRQQREVCNDMMSIAG
IEVSDLDFIFRKKEFLRFRTQMSKRLCQQQEEAELNGLYPVSGVPYVITK
SDEDSTTSARSIAISWFA*

mRNA from alignment at tig00000842_pilon:337757..340013-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2257bp|location=Sequence derived from alignment at tig00000842_pilon:337757..340013- (Gracilaria gracilis GNS1m male)
ATGCTGCGCAATGTCCGGTTCCGCGGTCTGACATCTGTCTCTGAATCGCA
AATAATCCATCTCTTTCGCACCGGTGACTTCGATGGCGCAATACGCCACT
TCGTCAAGCGGCCACCCGAAGCACGTTCCGATAATCTCTACGAGGTTGTG
ATCCGCGCCTGTGCTCAGGTGCCGGATTCGGTCGCAGCCAGTACCGTGTT
CAACAGCATGTCGAAACCCTCTCAAGCAGCCGCCGCAAATGTTGTTTCCG
CCTTGTGCAGAGAACGAAATGCTCACGCTGCGTTCCACTTTCTACAGGCT
CTTCCCTCCATAGGATTGGCTGTTGACCGTCGTTTTGTCTCCGCTATATC
TCGAGCTGCTCCTAACGATCGTTCACTACTAACTAAACTCCGCAAACTGC
GAGCCGTGCGTACAAAGCAACCGCTATCATCGGCGTCTCAATTTTTCCTA
CAAGAGGGCTTAAATGCTTCTGACAAAAAGGCTCCACCTCCTCGCACACG
CCGCTACGCCATTCAAGCCGTGGAGATGGAACAATCGCTGCGTGCGGCCG
TCCCTAATATTAACGCTGTGGAACGGAAATGGAGTCTTGCTCAGAATGAA
GAACCAATGCGCTCTGACACTGCTGTGTTGTCGGCAGCTATCTCCGCCTT
CGTGGCATGCGGTGGTGAAGGTGCAGTTAGAGCTATACACGTTCTCATGA
GTTGGGTCAGAACAAACCTGTGTGAGAAGGAATCTGGTCTACCAAAGTCC
ACATACACTGACAATCCGTCAGCTATGGCGTTGCTGCTCACCTCTGCCAC
CAAGGCCATTGCAGCCGCTTCATCGATTGTACCCGCAGTTTGTCTTTCTG
CGTATGACATATTGACAACCCTGAATATACCGCTCTTTGAGAGCAGTTTG
CCATTGACAGGCGCGCACTTCAAACTCCTACAGCATGCAGGTCTTTCGCT
CGACGAGACGCAACAGCGCATTGAACGTGCCAGGCGTCGTCACGTCCAGT
TAGATGAACAAGCGTTTTCTATGGCACTTGGAGCAATTCTACGCTGCGAC
GCTCGCTTGAACGACAAACTCGCTGCTGGAAAAGCGTGGATGGATGTAAT
GCGAAGTGCTTGCATTCCTCTTACCGTACACACGTACAACTTATTCGCAG
GTCAGCTGCGATATTGTAACGATCCGCAAATGGTGACCACGTTGCTTTCC
GACATGACAGAAACAGACATTGTTCCAACTGCCGTCACCTACGGCCTGAT
ATTCAGTGCTTGTGTGATTCCAGGTGATTATAGATCCACAAGGAGAAAAT
ATGCGTTACCCGTAACTCGCTGGCAACAGGAGCTTAGAATGATGGAAGAT
CACATGGCCAGAGCTGGGGTAAGGCATTCTCCTTATTCGCGTCTTTCACT
AGCAAGAGCTTACGCCCACTTGGGAATTAAGTCAAGGGCGTTAGAACAAT
TCGAAGCTTACCTGAGAAACTCTAAGTCAGATTCAGGTAACGGAAACGTC
GTATCATCTCGCATGGAGATTGAGGATGCTTTTGATCAGATGATATACAA
CTTTGCCCATTGTCGAGAATGTAGACCAGATGGACCCAAGACGGCAATAC
ATATTTATGAGCAAATGAGGGCGCATAAGTTTCCCCCATCCGGGCACATC
CTCGACTCACTATTAGCTGCATACGTCAGGATGGGAGACACCCACAGTGC
GATAGATTGTGCAAAGGAGTTTGTCAACCACGGAAGCATGACCCTGTCGT
ACACAGGAATTGTCCATCTCCTGGAAGCTCTTGCTGAGCTCCAAGACTCG
GACGCGTGGTGGAGCGTACGAAATCTCTGCGTGGATAACAAAGACTTGTT
GAAGTTACCCGAACTTCGGCCCTTTGTCAAAGAATTTATTATCAGCTTTG
CCAGGCGCCAACAGCGAGAAGTTTGTAACGACATGATGTCAATTGCTGGT
ATTGAAGTTTCCGATCTCGATTTCATCTTCAGGAAGAAAGAGTTCCTTCG
TTTCCGAACTCAGATGTCCAAGAGATTGTGCCAGCAACAAGAGGAAGCAG
AACTGAATGGCCTTGTACGAACAACGGCGGTTCCGCTTGACGCCCGGCAG
TGTGACCAGACAAGAACTAACTCAACTCCAAAAAGATCTAGAACATTTCA
TGGGAACTCTTTAGTACCCGGTTAGTGGTGTCCCCTATGTGATCACCAAG
AGTGATGAAGACAGTACTACTTCTGCGAGAAGTATAGCCATCTCATGGTT
TGCCTAG

Coding sequence (CDS) from alignment at tig00000842_pilon:337757..340013-

>Ggra5451.t1 ID=Ggra5451.t1|Name=Ggra5451.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00000842_pilon:337757..340013- (Gracilaria gracilis GNS1m male)
ATGCTGCGCAATGTCCGGTTCCGCGGTCTGACATCTGTCTCTGAATCGCA
AATAATCCATCTCTTTCGCACCGGTGACTTCGATGGCGCAATACGCCACT
TCGTCAAGCGGCCACCCGAAGCACGTTCCGATAATCTCTACGAGGTTGTG
ATCCGCGCCTGTGCTCAGGTGCCGGATTCGGTCGCAGCCAGTACCGTGTT
CAACAGCATGTCGAAACCCTCTCAAGCAGCCGCCGCAAATGTTGTTTCCG
CCTTGTGCAGAGAACGAAATGCTCACGCTGCGTTCCACTTTCTACAGGCT
CTTCCCTCCATAGGATTGGCTGTTGACCGTCGTTTTGTCTCCGCTATATC
TCGAGCTGCTCCTAACGATCGTTCACTACTAACTAAACTCCGCAAACTGC
GAGCCGTGCGTACAAAGCAACCGCTATCATCGGCGTCTCAATTTTTCCTA
CAAGAGGGCTTAAATGCTTCTGACAAAAAGGCTCCACCTCCTCGCACACG
CCGCTACGCCATTCAAGCCGTGGAGATGGAACAATCGCTGCGTGCGGCCG
TCCCTAATATTAACGCTGTGGAACGGAAATGGAGTCTTGCTCAGAATGAA
GAACCAATGCGCTCTGACACTGCTGTGTTGTCGGCAGCTATCTCCGCCTT
CGTGGCATGCGGTGGTGAAGGTGCAGTTAGAGCTATACACGTTCTCATGA
GTTGGGTCAGAACAAACCTGTGTGAGAAGGAATCTGGTCTACCAAAGTCC
ACATACACTGACAATCCGTCAGCTATGGCGTTGCTGCTCACCTCTGCCAC
CAAGGCCATTGCAGCCGCTTCATCGATTGTACCCGCAGTTTGTCTTTCTG
CGTATGACATATTGACAACCCTGAATATACCGCTCTTTGAGAGCAGTTTG
CCATTGACAGGCGCGCACTTCAAACTCCTACAGCATGCAGGTCTTTCGCT
CGACGAGACGCAACAGCGCATTGAACGTGCCAGGCGTCGTCACGTCCAGT
TAGATGAACAAGCGTTTTCTATGGCACTTGGAGCAATTCTACGCTGCGAC
GCTCGCTTGAACGACAAACTCGCTGCTGGAAAAGCGTGGATGGATGTAAT
GCGAAGTGCTTGCATTCCTCTTACCGTACACACGTACAACTTATTCGCAG
GTCAGCTGCGATATTGTAACGATCCGCAAATGGTGACCACGTTGCTTTCC
GACATGACAGAAACAGACATTGTTCCAACTGCCGTCACCTACGGCCTGAT
ATTCAGTGCTTGTGTGATTCCAGGTGATTATAGATCCACAAGGAGAAAAT
ATGCGTTACCCGTAACTCGCTGGCAACAGGAGCTTAGAATGATGGAAGAT
CACATGGCCAGAGCTGGGGTAAGGCATTCTCCTTATTCGCGTCTTTCACT
AGCAAGAGCTTACGCCCACTTGGGAATTAAGTCAAGGGCGTTAGAACAAT
TCGAAGCTTACCTGAGAAACTCTAAGTCAGATTCAGGTAACGGAAACGTC
GTATCATCTCGCATGGAGATTGAGGATGCTTTTGATCAGATGATATACAA
CTTTGCCCATTGTCGAGAATGTAGACCAGATGGACCCAAGACGGCAATAC
ATATTTATGAGCAAATGAGGGCGCATAAGTTTCCCCCATCCGGGCACATC
CTCGACTCACTATTAGCTGCATACGTCAGGATGGGAGACACCCACAGTGC
GATAGATTGTGCAAAGGAGTTTGTCAACCACGGAAGCATGACCCTGTCGT
ACACAGGAATTGTCCATCTCCTGGAAGCTCTTGCTGAGCTCCAAGACTCG
GACGCGTGGTGGAGCGTACGAAATCTCTGCGTGGATAACAAAGACTTGTT
GAAGTTACCCGAACTTCGGCCCTTTGTCAAAGAATTTATTATCAGCTTTG
CCAGGCGCCAACAGCGAGAAGTTTGTAACGACATGATGTCAATTGCTGGT
ATTGAAGTTTCCGATCTCGATTTCATCTTCAGGAAGAAAGAGTTCCTTCG
TTTCCGAACTCAGATGTCCAAGAGATTGTGCCAGCAACAAGAGGAAGCAG
AACTGAATGGCCTTTACCCGGTTAGTGGTGTCCCCTATGTGATCACCAAG
AGTGATGAAGACAGTACTACTTCTGCGAGAAGTATAGCCATCTCATGGTT
TGCCTAG