Ggra5413.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5413.t1
Unique NameGgra5413.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Homology
BLAST of Ggra5413.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 120 bits (301), Expect = 3.920e-27
Identity = 106/361 (29.36%), Postives = 168/361 (46.54%), Query Frame = 0
Query:   17 MVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLAKFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRIMGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVS----------LASLQT-KCTKDPV-YSYNISSEYRTFRGSQTSRRCFRGTCSSVFIQKP--------FVY---VSKQLEQGSGVGAGDT--SFFVTELHADDAFESPESFAQRAAEQYAAGIEDDVDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFSFAIQTHIFHDMSNPLDWRKLQLQ-GDISSLENAVVTCHFREGKKVLKLSDES 351
            MVLIP+KSQY SL+ TV S ++EL   SAVL   K+LECRAL+ G  +    H  + + +TV + + F+ +EV  S YSD D       + C S++  +          ++ +V + C  ++     Q  GN+S          +   +  +C K  V Y+ N+          +    C   +C  VF+ +         FV+   VS+ L +   +    T  S+ VT L +        +FA RA +  + G+ D   LR  +F G   T C F      AT++       +V  W +S+  F  SFAI+  IF+DMS+PL W +  ++  D+S  +N VVT  +  G + L ++  S
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCVGTSC--VFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLES--------AFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSD-ATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSS 350          
BLAST of Ggra5413.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 115 bits (289), Expect = 1.650e-25
Identity = 80/330 (24.24%), Postives = 153/330 (46.36%), Query Frame = 0
Query:   17 MVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLAKFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRIMGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVSLASLQTKCTKDPVYSYNISSEYRTFRGSQTS-----------RRCFRGTC--------------SSVFIQKPFVY--VSKQLEQGSGVGAGDTSFFVTELHADDAFESPESFAQRAAEQYAAGIEDDVDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFSFAIQTHIFHDMSNPLDWRK 319
            MVLIP+KSQY+SL++T+ S ++EL    A+L++  + EC AL++G  +   +H  +   + +++   F  +E++ S YSD    +  ++QPC++V   +R   +     E   + L+C   +      R GN S+ + + +C +     + +        G+  +            +C  G C              ++V+    F    VS      S +   +T+ F     A +  E    FA+R  + Y   + D  +LR  +FLG +  +C F      AT++ P + V + ++W++S+  +  +  +   +F+D+SNP+ W K
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIF----SAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQ-RTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAK 325          
BLAST of Ggra5413.t1 vs. uniprot
Match: A0A2V3ISI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 113 bits (282), Expect = 1.530e-24
Identity = 96/349 (27.51%), Postives = 158/349 (45.27%), Query Frame = 0
Query:   17 MVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLAKFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRIMGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVSLASLQTKCTKDPVYSYNISSEYRTFRGSQTSRRCFR----GTCSSVFIQKPFVYVSKQLEQGSGVGAGDTSFFVTELHADDAFESPESFAQRAAEQYAAG---------IEDDVDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFSFAIQTHIFHDMSNPLDWRKLQLQG-DISSLENAVVTCHFREGKKVLKLSDES 351
            MVLIP+KSQY SL++T+ S ++EL   SAVL   K+LECRAL  G  +    H  + R +TV + + F+ +EV  S +SD     G   + CIS++              + +V +NC   +     Q  GN+S    + KC  D ++S +I          + +  C        C+ ++     V  ++ +         D SF +   +A   +++   +     E+             + D   LR  +F G + T C F V   PAT I       +   W +S+  F  S AI+  +F+DMS+PLDW +  ++  D S ++N VVT  +  G + + ++  S
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNISDDG-EIKCGDDFLFSADIHHSPNEPVPDEHTMECILDGELNLCAFLYSNGSEVTFTEIVLDT------DLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFS-PATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSS 341          
The following BLAST results are available for this feature:
BLAST of Ggra5413.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J5C23.920e-2729.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A01.650e-2524.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI71.530e-2427.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..280
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 304..377
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 281..303
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..74
NoneNo IPR availableTMHMMTMhelixcoord: 25..47
NoneNo IPR availableTMHMMTMhelixcoord: 75..94
NoneNo IPR availableTMHMMTMhelixcoord: 281..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:370007..371140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1Ggra5413.t1Gracilaria gracilis GNS1m malemRNAtig00000099_pilon 370007..371140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MLVVNHSCARNTSGTSMVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLA
KFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRI
MGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVS
LASLQTKCTKDPVYSYNISSEYRTFRGSQTSRRCFRGTCSSVFIQKPFVY
VSKQLEQGSGVGAGDTSFFVTELHADDAFESPESFAQRAAEQYAAGIEDD
VDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFS
FAIQTHIFHDMSNPLDWRKLQLQGDISSLENAVVTCHFREGKKVLKLSDE
SHSICEVEGYEDWSEVCSTQGNEYETC*
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