Ggra5413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5413.t1
Unique NameGgra5413.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:370007..371140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5413Ggra5413Gracilaria gracilis GNS1m malegenetig00000099_pilon 370007..371140 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1.start1Ggra5413.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 370007..370009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1.CDS1Ggra5413.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 370007..371140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1.exon1Ggra5413.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 370007..371140 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1.stop1Ggra5413.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 371138..371140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5413.t1Ggra5413.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 370007..371140 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MLVVNHSCARNTSGTSMVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLA
KFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRI
MGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVS
LASLQTKCTKDPVYSYNISSEYRTFRGSQTSRRCFRGTCSSVFIQKPFVY
VSKQLEQGSGVGAGDTSFFVTELHADDAFESPESFAQRAAEQYAAGIEDD
VDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFS
FAIQTHIFHDMSNPLDWRKLQLQGDISSLENAVVTCHFREGKKVLKLSDE
SHSICEVEGYEDWSEVCSTQGNEYETC*
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spliced messenger RNA

>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000099_pilon:370007..371140+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCGTCAATCACTCATGCGCTCGAAACACCTCCGGCACAAGTAT
GGTTCTGATCCCCGTCAAATCGCAGTACATTAGTTTGCTATCCACAGTTT
TCTCAGCCGTCAGCGAACTGTTAGCATTCTCCGCTGTCCTGAAACTCGCA
AAGTTTCTGGAATGCCGCGCGTTACGACGTGGAATTCCTCTCAGGTACAA
CCAACATGTCCGAAAAATGCGAACAATCACAGTTCTATCTGCTATTACCT
TCCTCGTGGTAGAAGTTATCTACTCGCTCTACAGTGATTGCGATCGCATA
ATGGGACCGGAGGCTCAGCCGTGTATTTCTGTTAATGTGGCTTCTCGCCA
TCCACAGAATTTCCGAAAGTTCCGGGAATCTAATATCGTCACTCTCAACT
GTTCAACCGTCTCCCGGGGTACAGCGCATCAAAGATGCGGAAATGTGAGT
CTTGCAAGTCTCCAAACTAAATGCACTAAAGATCCAGTGTATTCATATAA
CATATCAAGCGAATATCGAACATTTCGAGGAAGCCAAACCTCAAGAAGAT
GTTTCCGTGGTACTTGCAGCTCCGTGTTCATACAGAAACCATTCGTTTAT
GTCTCGAAACAATTGGAACAGGGCAGCGGCGTGGGAGCTGGTGATACCAG
CTTCTTCGTCACAGAATTACATGCAGATGATGCCTTTGAATCCCCAGAAT
CTTTTGCTCAACGAGCGGCAGAACAATATGCAGCTGGAATAGAGGATGAT
GTTGATCTGCGTCTTCGCATTTTTCTGGGTATCAAGAATACCTCTTGCGT
TTTCTCTGTGGACAAAGGTCCTGCAACGAAGATACATCCCGCACTGTTCG
TGTTTATGGTATCCATTTGGATTGTGTCTGTAATAGGTTTCGGTTTCTCA
TTTGCAATTCAGACTCACATATTTCACGACATGAGTAATCCTCTTGATTG
GAGGAAGCTACAACTGCAAGGCGACATTTCATCGTTGGAAAACGCAGTGG
TCACGTGCCACTTCCGAGAGGGAAAGAAAGTCTTGAAGCTGTCCGACGAG
AGCCATAGCATCTGCGAAGTTGAAGGCTACGAAGACTGGAGCGAAGTGTG
TTCCACACAGGGCAACGAGTATGAGACTTGTTGA
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protein sequence of Ggra5413.t1

>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MLVVNHSCARNTSGTSMVLIPVKSQYISLLSTVFSAVSELLAFSAVLKLA
KFLECRALRRGIPLRYNQHVRKMRTITVLSAITFLVVEVIYSLYSDCDRI
MGPEAQPCISVNVASRHPQNFRKFRESNIVTLNCSTVSRGTAHQRCGNVS
LASLQTKCTKDPVYSYNISSEYRTFRGSQTSRRCFRGTCSSVFIQKPFVY
VSKQLEQGSGVGAGDTSFFVTELHADDAFESPESFAQRAAEQYAAGIEDD
VDLRLRIFLGIKNTSCVFSVDKGPATKIHPALFVFMVSIWIVSVIGFGFS
FAIQTHIFHDMSNPLDWRKLQLQGDISSLENAVVTCHFREGKKVLKLSDE
SHSICEVEGYEDWSEVCSTQGNEYETC*
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mRNA from alignment at tig00000099_pilon:370007..371140+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000099_pilon:370007..371140+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCGTCAATCACTCATGCGCTCGAAACACCTCCGGCACAAGTAT
GGTTCTGATCCCCGTCAAATCGCAGTACATTAGTTTGCTATCCACAGTTT
TCTCAGCCGTCAGCGAACTGTTAGCATTCTCCGCTGTCCTGAAACTCGCA
AAGTTTCTGGAATGCCGCGCGTTACGACGTGGAATTCCTCTCAGGTACAA
CCAACATGTCCGAAAAATGCGAACAATCACAGTTCTATCTGCTATTACCT
TCCTCGTGGTAGAAGTTATCTACTCGCTCTACAGTGATTGCGATCGCATA
ATGGGACCGGAGGCTCAGCCGTGTATTTCTGTTAATGTGGCTTCTCGCCA
TCCACAGAATTTCCGAAAGTTCCGGGAATCTAATATCGTCACTCTCAACT
GTTCAACCGTCTCCCGGGGTACAGCGCATCAAAGATGCGGAAATGTGAGT
CTTGCAAGTCTCCAAACTAAATGCACTAAAGATCCAGTGTATTCATATAA
CATATCAAGCGAATATCGAACATTTCGAGGAAGCCAAACCTCAAGAAGAT
GTTTCCGTGGTACTTGCAGCTCCGTGTTCATACAGAAACCATTCGTTTAT
GTCTCGAAACAATTGGAACAGGGCAGCGGCGTGGGAGCTGGTGATACCAG
CTTCTTCGTCACAGAATTACATGCAGATGATGCCTTTGAATCCCCAGAAT
CTTTTGCTCAACGAGCGGCAGAACAATATGCAGCTGGAATAGAGGATGAT
GTTGATCTGCGTCTTCGCATTTTTCTGGGTATCAAGAATACCTCTTGCGT
TTTCTCTGTGGACAAAGGTCCTGCAACGAAGATACATCCCGCACTGTTCG
TGTTTATGGTATCCATTTGGATTGTGTCTGTAATAGGTTTCGGTTTCTCA
TTTGCAATTCAGACTCACATATTTCACGACATGAGTAATCCTCTTGATTG
GAGGAAGCTACAACTGCAAGGCGACATTTCATCGTTGGAAAACGCAGTGG
TCACGTGCCACTTCCGAGAGGGAAAGAAAGTCTTGAAGCTGTCCGACGAG
AGCCATAGCATCTGCGAAGTTGAAGGCTACGAAGACTGGAGCGAAGTGTG
TTCCACACAGGGCAACGAGTATGAGACTTGTTGA
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Coding sequence (CDS) from alignment at tig00000099_pilon:370007..371140+

>Ggra5413.t1 ID=Ggra5413.t1|Name=Ggra5413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000099_pilon:370007..371140+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCGTCAATCACTCATGCGCTCGAAACACCTCCGGCACAAGTAT
GGTTCTGATCCCCGTCAAATCGCAGTACATTAGTTTGCTATCCACAGTTT
TCTCAGCCGTCAGCGAACTGTTAGCATTCTCCGCTGTCCTGAAACTCGCA
AAGTTTCTGGAATGCCGCGCGTTACGACGTGGAATTCCTCTCAGGTACAA
CCAACATGTCCGAAAAATGCGAACAATCACAGTTCTATCTGCTATTACCT
TCCTCGTGGTAGAAGTTATCTACTCGCTCTACAGTGATTGCGATCGCATA
ATGGGACCGGAGGCTCAGCCGTGTATTTCTGTTAATGTGGCTTCTCGCCA
TCCACAGAATTTCCGAAAGTTCCGGGAATCTAATATCGTCACTCTCAACT
GTTCAACCGTCTCCCGGGGTACAGCGCATCAAAGATGCGGAAATGTGAGT
CTTGCAAGTCTCCAAACTAAATGCACTAAAGATCCAGTGTATTCATATAA
CATATCAAGCGAATATCGAACATTTCGAGGAAGCCAAACCTCAAGAAGAT
GTTTCCGTGGTACTTGCAGCTCCGTGTTCATACAGAAACCATTCGTTTAT
GTCTCGAAACAATTGGAACAGGGCAGCGGCGTGGGAGCTGGTGATACCAG
CTTCTTCGTCACAGAATTACATGCAGATGATGCCTTTGAATCCCCAGAAT
CTTTTGCTCAACGAGCGGCAGAACAATATGCAGCTGGAATAGAGGATGAT
GTTGATCTGCGTCTTCGCATTTTTCTGGGTATCAAGAATACCTCTTGCGT
TTTCTCTGTGGACAAAGGTCCTGCAACGAAGATACATCCCGCACTGTTCG
TGTTTATGGTATCCATTTGGATTGTGTCTGTAATAGGTTTCGGTTTCTCA
TTTGCAATTCAGACTCACATATTTCACGACATGAGTAATCCTCTTGATTG
GAGGAAGCTACAACTGCAAGGCGACATTTCATCGTTGGAAAACGCAGTGG
TCACGTGCCACTTCCGAGAGGGAAAGAAAGTCTTGAAGCTGTCCGACGAG
AGCCATAGCATCTGCGAAGTTGAAGGCTACGAAGACTGGAGCGAAGTGTG
TTCCACACAGGGCAACGAGTATGAGACTTGTTGA
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