Ggra5387.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5387.t1
Unique NameGgra5387.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Homology
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BLAST of Ggra5387.t1 vs. uniprot
Match: A0A2V3ISU4 (B-block_TFIIIC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISU4_9FLOR)

HSP 1 Score: 244 bits (624), Expect = 3.090e-70
Identity = 152/256 (59.38%), Postives = 180/256 (70.31%), Query Frame = 0 
Query:   22 VVDHIALSGSAGSSLQASLTAVLGHQPRKGILIFLCRQFAARPQRFCLKPNSSAPADEVVIIAHGAIRLRALGFSSLEQPAFPRQALQILERAGMARRDGILQSELGQYVGLAPNMVHHYLGDLVARSPVAPKKVVLTKRKSQSAVKKQPEPVTSQPDQLKPHETNSN---KTVTYTAVVVLTRYAPMISQSSASRPLIS-----LTESSNAQDDEDEQCPSKSPSVIDLPMETRAHRVMQALQPEPHTRSEKDMK 269
            VVDHIALSGSAG+SL  SLTAVLG QPR+G++I+L RQFAAR  RF  KP+ +APA EV + AH  IR RALGF+ LEQ   P  A  +LER GMA  +GILQSELG+YVGLAPNMVHHYLG L+ARS VA KKVVLTK+++   +KK  E +T QP   +   T+ +    +VTYTAVVVL RYA  ISQS+AS+ L        TE S     +     S +PSVIDL METR  R+M ALQP PHTRSEKD+K
Sbjct:    8 VVDHIALSGSAGASLLDSLTAVLGRQPRRGLVIYLHRQFAARSDRFFAKPSFNAPAHEVRLTAHDNIRQRALGFTPLEQSPLPSHAYNVLERIGMAGSNGILQSELGKYVGLAPNMVHHYLGVLMARSLVARKKVVLTKQRT--VIKK--EQLTDQPVTNQETLTSGDGLGPSVTYTAVVVLARYALNISQSTASKSLAPPHDQPQTEPSPESTSQQPSKASSAPSVIDLTMETRIERIMLALQPSPHTRSEKDLK 259
The following BLAST results are available for this feature:
BLAST of Ggra5387.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISU43.090e-7059.38B-block_TFIIIC domain-containing protein n=1 Tax=G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007309B-block binding subunit of TFIIICPFAMPF04182B-block_TFIIICcoord: 107..204
e-value: 1.4E-4
score: 21.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:106235..109476 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1Ggra5387.t1Gracilaria gracilis GNS1m malemRNAtig00000099_pilon 106235..109476 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MDCQVSKPMRGEEDGCGAEIAVVDHIALSGSAGSSLQASLTAVLGHQPRK
GILIFLCRQFAARPQRFCLKPNSSAPADEVVIIAHGAIRLRALGFSSLEQ
PAFPRQALQILERAGMARRDGILQSELGQYVGLAPNMVHHYLGDLVARSP
VAPKKVVLTKRKSQSAVKKQPEPVTSQPDQLKPHETNSNKTVTYTAVVVL
TRYAPMISQSSASRPLISLTESSNAQDDEDEQCPSKSPSVIDLPMETRAH
RVMQALQPEPHTRSEKDMK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007309TFIIIC_Bblock-bd