Ggra5387.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5387.t1
Unique NameGgra5387.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:106235..109476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5387Ggra5387Gracilaria gracilis GNS1m malegenetig00000099_pilon 106235..109476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1Ggra5387.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 106235..109476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1.stop1Ggra5387.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 106235..106237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1.CDS1Ggra5387.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 106235..106981 -
Ggra5387.t1.CDS2Ggra5387.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 109414..109476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1.exon1Ggra5387.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 106235..106981 -
Ggra5387.t1.exon2Ggra5387.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 109414..109476 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1.intron1Ggra5387.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 106982..109413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5387.t1.start1Ggra5387.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 109474..109476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MDCQVSKPMRGEEDGCGAEIAVVDHIALSGSAGSSLQASLTAVLGHQPRK
GILIFLCRQFAARPQRFCLKPNSSAPADEVVIIAHGAIRLRALGFSSLEQ
PAFPRQALQILERAGMARRDGILQSELGQYVGLAPNMVHHYLGDLVARSP
VAPKKVVLTKRKSQSAVKKQPEPVTSQPDQLKPHETNSNKTVTYTAVVVL
TRYAPMISQSSASRPLISLTESSNAQDDEDEQCPSKSPSVIDLPMETRAH
RVMQALQPEPHTRSEKDMK*
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spliced messenger RNA

>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000099_pilon:106235..109476- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGCCAAGTCTCAAAACCAATGCGTGGGGAAGAAGACGGCTGCGG
TGCGGAAATCGCGGTCGTTGATCACATTGCGCTCTCGGGATCCGCCGGCT
CATCCCTTCAAGCTTCCTTAACGGCCGTCCTCGGGCATCAACCACGTAAA
GGCATACTCATCTTTCTCTGTCGTCAGTTCGCAGCCAGACCCCAACGCTT
CTGCCTCAAGCCCAATTCCTCAGCACCCGCCGATGAAGTCGTTATCATTG
CCCACGGTGCCATACGTCTACGAGCTCTGGGTTTCTCATCTCTGGAACAG
CCAGCCTTTCCCAGACAGGCGCTGCAGATCCTTGAACGCGCCGGTATGGC
ACGTCGCGACGGAATTCTGCAGTCAGAGCTTGGACAATACGTAGGCCTTG
CTCCCAACATGGTGCATCATTATCTTGGTGACCTTGTTGCTCGGTCACCA
GTTGCGCCCAAAAAAGTGGTGCTCACTAAACGGAAATCACAGTCAGCTGT
CAAGAAACAGCCCGAACCTGTCACGTCTCAACCAGACCAACTTAAACCTC
ACGAAACTAACTCAAACAAAACTGTCACCTATACAGCTGTTGTCGTTTTA
ACTCGCTACGCACCTATGATATCGCAATCCTCAGCATCGAGACCACTAAT
ATCTCTCACTGAGTCTAGCAACGCTCAAGACGACGAAGACGAACAGTGTC
CATCAAAATCCCCTTCTGTAATTGATCTCCCCATGGAGACCCGTGCTCAT
CGCGTCATGCAAGCACTGCAGCCAGAACCTCACACCCGCTCTGAGAAGGA
CATGAAATAG
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protein sequence of Ggra5387.t1

>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MDCQVSKPMRGEEDGCGAEIAVVDHIALSGSAGSSLQASLTAVLGHQPRK
GILIFLCRQFAARPQRFCLKPNSSAPADEVVIIAHGAIRLRALGFSSLEQ
PAFPRQALQILERAGMARRDGILQSELGQYVGLAPNMVHHYLGDLVARSP
VAPKKVVLTKRKSQSAVKKQPEPVTSQPDQLKPHETNSNKTVTYTAVVVL
TRYAPMISQSSASRPLISLTESSNAQDDEDEQCPSKSPSVIDLPMETRAH
RVMQALQPEPHTRSEKDMK*
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mRNA from alignment at tig00000099_pilon:106235..109476-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3242bp|location=Sequence derived from alignment at tig00000099_pilon:106235..109476- (Gracilaria gracilis GNS1m male)
ATGGATTGCCAAGTCTCAAAACCAATGCGTGGGGAAGAAGACGGCTGCGG
TGCGGAAATCGCGGTGAGCGTCGCCAGCGCGCCGCCCCCTTTTGTACTGG
TACTGTGAGGTATTTAAAACGTTCAAAAAACTTTTCAAACATTTTAAACG
GTTTTTTGGCGTTTAAAACATTCAAAAAAGGTTCAGAAAACATTCAAAAA
CCATGAACTTTTTGGTTCTTTGACACAGACATTCACATAAATTCGAGCAT
GCAGGCACTTTGTCTGCATCAAAAGTTCTAAGGGGCTGGCTGTACTACAG
CCCTGCGAAGAGTCTGGTTGATACTACCAGGGGGCGCGCATGGCAACTTG
TGTCCTCTCTTGAAGAACTTCATGCCTTCGTACGCAGAATGCTTTTACGA
AATGCCTCGGAAACATCATACGGGGCAGGGCGGGGCCTAATTGCGCCACC
TCCACCAATATCCACATTAACTTCTGATCGTGAAAATGCTCCCGCGAAAG
AGAACGTTGCAATGAATGGCAGCAGTTTCTCTGCAAATCCGTTTGGCATT
CAAAGCTCGCAGAATTTTTTCTCTATGTTGATGGAAAAGTCAGAGGCTCA
GTTCGCGAAAGAGCATGAATCTGTTGAAAAGGATGACCTTGCGGAAGATG
AGCATGGCGTACCAGATTTGTCGAAGCTGGCATCCAGACTTCGAGTTGTG
AGCTTGGCTGGACTGTCTCGTGCGGAAAAAGGCGTTTTGGCAGCTATTGC
TAGAGCGACAGCATTAGTCCGCGCCATCCTGGGTTCTTTGGATGTTCTAG
GGGGCTCGTTTTGCTGTCTTGGCATCATGCTACAGGGAGCTTTCGAGACT
TTCGAGAAACGCTACCTTGCCGCTTTCAGCTATATCGAAGGCTGCTCATT
TTTCTTCATCTGACGCACTTTTGGACTTCTTTCTTCCCCAAAGCACCCCT
GGTCAACCGTTTTCGAGGGAGAAGGCAAGAGCATGGGATAGTACGAGAGC
CTTATGGGCAGGTTGGTGGGTGAACACCCTGTCTGGATGCAAGCGGTTGG
CGGAGCGGATTGCAAGAGCTGATTTCAATTCCGCTCGCAATCCAGATGCT
GCTGCCTTGTGGTACATAGTAATGGGTCGAAGAAGATCTTTGTCCGCTCT
GTATAGGGCGCAACAGAACACTCGAATGGCTCAATTCTTATCCCGAGATT
TCAGTACTGATGAGAACAAACTGACCGCTAGGAAGAACGCGTTTGTTTTG
TTATCAAAGCATCGAATGGAAATGGCTGTAGCATTCTTCTTCCTCACTTC
AGAGGTATAAAGTGCGATTAACCTTGTCAGGTCCCGAATGAAATACAATC
AACTGGCAGTCTTTCTTGCTCGCTGCGTGCATGTGAAGTTTTGTGGCAAC
CAAGATTACCAACCGCCGAGGACTTTTTCGAACGGGACGACGATATGAAC
TCCATGACTTCTGGGTGCAGCTCACTTGCTCCAGATTCAGTGTCGATCGA
AGCACTGCGTCACGTCCCAAGCAATCCTGCGATCTTAAGTATTTCACCGA
CGCTGGGACATATATGTAGATATCGTGGAACCCCATCTATCTCTATGGTA
GGAGACGCCGCTGGGCTCAGTGCAGTGATTACTGATGACTCATTCGCGAC
TCCGATGCTTTCGGTGAGCCACGACGATCCCTTTGCTGTCATTCGGATTC
TCCCTGCCCTCGGTTCTACGCTTGGGCTGCTTCGGCAGCATGTCTGTGTG
GCCATCTGGCATATCATGCAGCGGATTTGCCCGGAGGACATCAGAAGCGA
ACAAGCACAAGAAGCATCATCGAAGTTCGCATTCTCTGTTGGCGATCGAT
TGTGAGACAGGATATGACAATTCGTTCCGTCTGGTACGGGCTTCGGAGAG
CCTGGAGCAACTCGCGGAAGATGCAATGTCGCAATGAGTGCCTCTGCGTG
GCTTTGGCTCAGGAGCGAACGCAAACGACTCCTCACAGCTTGACGAAGCA
ACAGGTGCGTTTATTGACCGTTGGACGGCTCTGGGCTGTTTACCAGAGTA
TGCACCCGTGCTATCTGAGGCAGCGACAGTAGCTGCTGCAGAGATGGCAG
CAGCTGCTTCCAAAGCGGCTGTAGAAGCGGCAGAACAAAAAATGGCGGGC
GAAGAAGGCGCAAGAGAAGCGAACGAAAATGGGCTGCTGAAAGTACTGCT
GTGAAGGAGGGATTGAAGTTGTTCGATACAACCTCCGCAGACTCGCTGTG
TGGGGCATGCCCGGTTCGGTTCTCCTCTTCAGCTCAGGGACCGTGGTCGG
GGAAAGGAAGAAATGCATCTCTATACCGCGAGGACGAGTGCTTTTCAGGA
CGCTGTGCGTGAGTGCCACAGACCCTCCCTCAGTTATTGTAGCAACCTGG
TAGCAACGCCGAAAGGAATACAAGAGATTGTACCTTCCTCATACACGACT
ATGCCGGCGGGATTCCGCACTGCTATGGATTAACTGTTCGCTCAGGTCGT
TGATCACATTGCGCTCTCGGGATCCGCCGGCTCATCCCTTCAAGCTTCCT
TAACGGCCGTCCTCGGGCATCAACCACGTAAAGGCATACTCATCTTTCTC
TGTCGTCAGTTCGCAGCCAGACCCCAACGCTTCTGCCTCAAGCCCAATTC
CTCAGCACCCGCCGATGAAGTCGTTATCATTGCCCACGGTGCCATACGTC
TACGAGCTCTGGGTTTCTCATCTCTGGAACAGCCAGCCTTTCCCAGACAG
GCGCTGCAGATCCTTGAACGCGCCGGTATGGCACGTCGCGACGGAATTCT
GCAGTCAGAGCTTGGACAATACGTAGGCCTTGCTCCCAACATGGTGCATC
ATTATCTTGGTGACCTTGTTGCTCGGTCACCAGTTGCGCCCAAAAAAGTG
GTGCTCACTAAACGGAAATCACAGTCAGCTGTCAAGAAACAGCCCGAACC
TGTCACGTCTCAACCAGACCAACTTAAACCTCACGAAACTAACTCAAACA
AAACTGTCACCTATACAGCTGTTGTCGTTTTAACTCGCTACGCACCTATG
ATATCGCAATCCTCAGCATCGAGACCACTAATATCTCTCACTGAGTCTAG
CAACGCTCAAGACGACGAAGACGAACAGTGTCCATCAAAATCCCCTTCTG
TAATTGATCTCCCCATGGAGACCCGTGCTCATCGCGTCATGCAAGCACTG
CAGCCAGAACCTCACACCCGCTCTGAGAAGGACATGAAATAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:106235..109476-

>Ggra5387.t1 ID=Ggra5387.t1|Name=Ggra5387.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000099_pilon:106235..109476- (Gracilaria gracilis GNS1m male)
ATGGATTGCCAAGTCTCAAAACCAATGCGTGGGGAAGAAGACGGCTGCGG
TGCGGAAATCGCGGTCGTTGATCACATTGCGCTCTCGGGATCCGCCGGCT
CATCCCTTCAAGCTTCCTTAACGGCCGTCCTCGGGCATCAACCACGTAAA
GGCATACTCATCTTTCTCTGTCGTCAGTTCGCAGCCAGACCCCAACGCTT
CTGCCTCAAGCCCAATTCCTCAGCACCCGCCGATGAAGTCGTTATCATTG
CCCACGGTGCCATACGTCTACGAGCTCTGGGTTTCTCATCTCTGGAACAG
CCAGCCTTTCCCAGACAGGCGCTGCAGATCCTTGAACGCGCCGGTATGGC
ACGTCGCGACGGAATTCTGCAGTCAGAGCTTGGACAATACGTAGGCCTTG
CTCCCAACATGGTGCATCATTATCTTGGTGACCTTGTTGCTCGGTCACCA
GTTGCGCCCAAAAAAGTGGTGCTCACTAAACGGAAATCACAGTCAGCTGT
CAAGAAACAGCCCGAACCTGTCACGTCTCAACCAGACCAACTTAAACCTC
ACGAAACTAACTCAAACAAAACTGTCACCTATACAGCTGTTGTCGTTTTA
ACTCGCTACGCACCTATGATATCGCAATCCTCAGCATCGAGACCACTAAT
ATCTCTCACTGAGTCTAGCAACGCTCAAGACGACGAAGACGAACAGTGTC
CATCAAAATCCCCTTCTGTAATTGATCTCCCCATGGAGACCCGTGCTCAT
CGCGTCATGCAAGCACTGCAGCCAGAACCTCACACCCGCTCTGAGAAGGA
CATGAAATAG
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