Ggra5348.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5348.t1
Unique NameGgra5348.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Homology
BLAST of Ggra5348.t1 vs. uniprot
Match: A0A2V3IRV0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 176 bits (445), Expect = 2.390e-47
Identity = 122/345 (35.36%), Postives = 178/345 (51.59%), Query Frame = 0
Query:    1 MIVLAALFTVSVEFLFIFLATNRHQKYDSNIEEVPVFVFEDRGYDWVWG--IDQDEYNRYGPLTRISGFDVRVELDICSSISVFPTGQRWNTLGPDMVKMFLRVFSSGRVEVELIDRNVTRIKKIKMGLTSDFGHFYVGSQNVSENDMLHALVTRLERSTMTI-DSSSQTFLVETGSSLSTVPCF------GVEVLLNAGNVDITATDRCDTSNP----GPRPAFIPFYIFELVHSIMFPTVKGMGRRLSPSETHMLNNMVV----HNRPWIGIVLIIIISSTLFCAWALLTAFGLEGGVDSQWAWKEFFKDIRSTDDFGRGQDEEQEMQWRCHESGSLTFGFTP 328
            +++L  L TV VEFLFIFLATN+++ Y   ++EVPVF FEDRG + +    ID      +   T  +GF+    L ICSS +V    +       + +  F+ + + G V+V +  R +  +++  +G+  + G  Y G QNVS   +L AL  R  RS  TI D+ +Q  +      L   P           +L++  NVD+  T      +P    G     +  Y+ ++  SIMFPT  G G RL   E   L+ +      +NRPWIG++  +II   L   W  +    +E  VDS+ AWKEFFK   S +DFG+G DE QEM WRC  SG+ +FGF+P
Sbjct:  151 LLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIASPVIDSCIQESW---TEKAGFNTHGYLQICSSQTVSAAVEDEKLSKSNGIVSFVILDTDG-VDVIVRYREINAVERTTIGVILESGSVYQGLQNVSSKSLLFALSNRFRRSNATILDTFAQDNMDSGAGILENPPTEQNAKPDAASILVSLENVDLRETHLSHILHPNSSEGDLNLAMVIYLHDVARSIMFPTGTGRGVRLRGREILYLDEVETPLAHYNRPWIGVLPSLIICGVLLLIWIFVAVMRIENEVDSRLAWKEFFKSTMSVEDFGKGSDEWQEMCWRCDGSGNRSFGFSP 491          
BLAST of Ggra5348.t1 vs. uniprot
Match: A0A2V3ICE5 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE5_9FLOR)

HSP 1 Score: 143 bits (360), Expect = 2.440e-35
Identity = 96/336 (28.57%), Postives = 165/336 (49.11%), Query Frame = 0
Query:   10 VSVEFLFIFLATNRHQKYDSNIEEVPVFVFEDRGYDWVWGIDQDEYNRYGPLTRISGFDVRVELDICS--SISVFPTGQRWNTLGPDMVKMFL-RVFSSGRVEVELIDRNVTRIKKIKMGLTS-DFGHFYVGSQNVSENDMLHALVTRLERSTMTIDS------SSQTFLVETGSSLSTVPCFGVEVLLNAGNVDITATDRCDTSNPGPRP-----AFIPFYIFELVHSIMFPTVKGMGRRLSPSETHMLNN----MVVHNRPWIGIVLIIIISSTLFCAWALLTAFGLEGGVDSQWAWKEFFKDIRSTDDFGRGQDEEQEMQWRCHESGSLTFGF 326
            V +EF+FIFL+T + + +D ++  VPVF F+DRG + V+ +  +  N  G +   +GF+ R  +  C+  S S+  TG ++   G   + + + RV     +   L D         K+G+   D G F+    N  E ++ + + +RL R+ +T+ +      SS T  V+ G +++ +       LL+   +D+T T   +       P       +P ++   ++S++ P+ +  G   +      L+     +  + RP +G+V  +II   L   W +  A G+E GVDS+WAWKEFF D    +DF RG DE +E+ WR    G+  FGF
Sbjct:  133 VCMEFIFIFLSTGQKKVFDVHLGTVPVFEFKDRGCESVFPVPINTCNNMGGIAEKAGFESRAYIQACTGYSASLLKTGGKFGESGEAFISLIINRVVG---ITATLRDDATVFDMYNKVGVVMMDNGAFFSAMTNQGEEEVANVVSSRLNRANVTVRTWEIVNISSPTSTVDGGRNMALL------FLLDISKLDVTGTSLWNAPGVSDGPWNDPHRVMPVFLMGAINSVIVPSGQARGEYSNEDRFFYLDMIEDPLAYYTRPRMGVVPSLIICGVLVVVWIVAVALGMEDGVDSRWAWKEFFSDTHHVEDFARGNDESKELGWRFDNDGTEIFGF 459          
The following BLAST results are available for this feature:
BLAST of Ggra5348.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IRV02.390e-4735.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICE52.440e-3528.57Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 280..333
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 254..279
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..210
NoneNo IPR availableTMHMMTMhelixcoord: 253..275
NoneNo IPR availableTMHMMTMhelixcoord: 4..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:234410..235411 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5348.t1Ggra5348.t1Gracilaria gracilis GNS1m malemRNAtig00000172_pilon 234410..235411 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MIVLAALFTVSVEFLFIFLATNRHQKYDSNIEEVPVFVFEDRGYDWVWGI
DQDEYNRYGPLTRISGFDVRVELDICSSISVFPTGQRWNTLGPDMVKMFL
RVFSSGRVEVELIDRNVTRIKKIKMGLTSDFGHFYVGSQNVSENDMLHAL
VTRLERSTMTIDSSSQTFLVETGSSLSTVPCFGVEVLLNAGNVDITATDR
CDTSNPGPRPAFIPFYIFELVHSIMFPTVKGMGRRLSPSETHMLNNMVVH
NRPWIGIVLIIIISSTLFCAWALLTAFGLEGGVDSQWAWKEFFKDIRSTD
DFGRGQDEEQEMQWRCHESGSLTFGFTPVAHQV*
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