Ggra5348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5348.t1
Unique Name	Ggra5348.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:234410..235411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5348	Ggra5348	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 234410..235411 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5348.t1.start1	Ggra5348.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 234410..234412 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5348.t1.CDS1	Ggra5348.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 234410..235411 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5348.t1.exon1	Ggra5348.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 234410..235411 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5348.t1.stop1	Ggra5348.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 235409..235411 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5348.t1	Ggra5348.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 234410..235411 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:234410..235411+
coding sequence from alignment at tig00000172_pilon:234410..235411+

mRNA sequence

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MIVLAALFTVSVEFLFIFLATNRHQKYDSNIEEVPVFVFEDRGYDWVWGI
DQDEYNRYGPLTRISGFDVRVELDICSSISVFPTGQRWNTLGPDMVKMFL
RVFSSGRVEVELIDRNVTRIKKIKMGLTSDFGHFYVGSQNVSENDMLHAL
VTRLERSTMTIDSSSQTFLVETGSSLSTVPCFGVEVLLNAGNVDITATDR
CDTSNPGPRPAFIPFYIFELVHSIMFPTVKGMGRRLSPSETHMLNNMVVH
NRPWIGIVLIIIISSTLFCAWALLTAFGLEGGVDSQWAWKEFFKDIRSTD
DFGRGQDEEQEMQWRCHESGSLTFGFTPVAHQV*

spliced messenger RNA

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000172_pilon:234410..235411+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGTACTTGCCGCTTTATTCACTGTTTCCGTCGAGTTTTTGTTTAT
CTTCCTAGCAACGAATCGCCACCAAAAGTACGATTCAAATATTGAAGAAG
TTCCGGTTTTTGTGTTTGAAGATAGAGGGTATGACTGGGTTTGGGGAATT
GATCAAGATGAGTACAATAGATATGGACCACTAACCAGGATATCTGGCTT
TGATGTACGAGTAGAATTGGATATCTGTTCGTCGATATCAGTATTTCCAA
CAGGTCAACGGTGGAATACCCTTGGGCCAGATATGGTAAAGATGTTCCTG
CGTGTCTTCTCCAGCGGCAGGGTTGAAGTAGAGCTCATTGATCGAAACGT
GACCCGCATTAAGAAAATCAAAATGGGATTGACTTCGGACTTTGGGCATT
TCTATGTGGGAAGTCAAAATGTGAGTGAGAACGATATGTTGCATGCTTTG
GTAACAAGGCTAGAGCGATCAACTATGACAATTGATTCAAGTTCCCAAAC
ATTTTTGGTAGAGACTGGTTCATCTCTTTCAACAGTTCCATGTTTTGGCG
TGGAAGTTCTTTTGAACGCAGGAAATGTGGATATTACTGCCACGGATCGG
TGTGACACTTCAAACCCAGGGCCTCGACCAGCTTTTATCCCATTCTACAT
ATTTGAATTGGTGCACTCCATCATGTTTCCCACTGTGAAGGGTATGGGAA
GACGCCTGTCTCCCTCCGAGACTCACATGTTGAACAATATGGTAGTCCAC
AACAGACCGTGGATTGGAATCGTGCTCATTATAATCATAAGTTCCACTTT
GTTCTGCGCATGGGCTTTGCTCACTGCATTTGGTTTGGAAGGTGGCGTGG
ACTCGCAATGGGCGTGGAAAGAGTTCTTCAAAGATATACGCTCGACAGAC
GACTTTGGGAGAGGACAAGATGAGGAGCAAGAAATGCAGTGGAGGTGCCA
TGAGAGCGGGTCTCTAACCTTCGGATTCACACCAGTTGCACATCAGGTGT
GA

protein sequence of Ggra5348.t1

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MIVLAALFTVSVEFLFIFLATNRHQKYDSNIEEVPVFVFEDRGYDWVWGI
DQDEYNRYGPLTRISGFDVRVELDICSSISVFPTGQRWNTLGPDMVKMFL
RVFSSGRVEVELIDRNVTRIKKIKMGLTSDFGHFYVGSQNVSENDMLHAL
VTRLERSTMTIDSSSQTFLVETGSSLSTVPCFGVEVLLNAGNVDITATDR
CDTSNPGPRPAFIPFYIFELVHSIMFPTVKGMGRRLSPSETHMLNNMVVH
NRPWIGIVLIIIISSTLFCAWALLTAFGLEGGVDSQWAWKEFFKDIRSTD
DFGRGQDEEQEMQWRCHESGSLTFGFTPVAHQV*

mRNA from alignment at tig00000172_pilon:234410..235411+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000172_pilon:234410..235411+ (Gracilaria gracilis GNS1m male)
ATGATAGTACTTGCCGCTTTATTCACTGTTTCCGTCGAGTTTTTGTTTAT
CTTCCTAGCAACGAATCGCCACCAAAAGTACGATTCAAATATTGAAGAAG
TTCCGGTTTTTGTGTTTGAAGATAGAGGGTATGACTGGGTTTGGGGAATT
GATCAAGATGAGTACAATAGATATGGACCACTAACCAGGATATCTGGCTT
TGATGTACGAGTAGAATTGGATATCTGTTCGTCGATATCAGTATTTCCAA
CAGGTCAACGGTGGAATACCCTTGGGCCAGATATGGTAAAGATGTTCCTG
CGTGTCTTCTCCAGCGGCAGGGTTGAAGTAGAGCTCATTGATCGAAACGT
GACCCGCATTAAGAAAATCAAAATGGGATTGACTTCGGACTTTGGGCATT
TCTATGTGGGAAGTCAAAATGTGAGTGAGAACGATATGTTGCATGCTTTG
GTAACAAGGCTAGAGCGATCAACTATGACAATTGATTCAAGTTCCCAAAC
ATTTTTGGTAGAGACTGGTTCATCTCTTTCAACAGTTCCATGTTTTGGCG
TGGAAGTTCTTTTGAACGCAGGAAATGTGGATATTACTGCCACGGATCGG
TGTGACACTTCAAACCCAGGGCCTCGACCAGCTTTTATCCCATTCTACAT
ATTTGAATTGGTGCACTCCATCATGTTTCCCACTGTGAAGGGTATGGGAA
GACGCCTGTCTCCCTCCGAGACTCACATGTTGAACAATATGGTAGTCCAC
AACAGACCGTGGATTGGAATCGTGCTCATTATAATCATAAGTTCCACTTT
GTTCTGCGCATGGGCTTTGCTCACTGCATTTGGTTTGGAAGGTGGCGTGG
ACTCGCAATGGGCGTGGAAAGAGTTCTTCAAAGATATACGCTCGACAGAC
GACTTTGGGAGAGGACAAGATGAGGAGCAAGAAATGCAGTGGAGGTGCCA
TGAGAGCGGGTCTCTAACCTTCGGATTCACACCAGTTGCACATCAGGTGT
GA

Coding sequence (CDS) from alignment at tig00000172_pilon:234410..235411+

>Ggra5348.t1 ID=Ggra5348.t1|Name=Ggra5348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000172_pilon:234410..235411+ (Gracilaria gracilis GNS1m male)
ATGATAGTACTTGCCGCTTTATTCACTGTTTCCGTCGAGTTTTTGTTTAT
CTTCCTAGCAACGAATCGCCACCAAAAGTACGATTCAAATATTGAAGAAG
TTCCGGTTTTTGTGTTTGAAGATAGAGGGTATGACTGGGTTTGGGGAATT
GATCAAGATGAGTACAATAGATATGGACCACTAACCAGGATATCTGGCTT
TGATGTACGAGTAGAATTGGATATCTGTTCGTCGATATCAGTATTTCCAA
CAGGTCAACGGTGGAATACCCTTGGGCCAGATATGGTAAAGATGTTCCTG
CGTGTCTTCTCCAGCGGCAGGGTTGAAGTAGAGCTCATTGATCGAAACGT
GACCCGCATTAAGAAAATCAAAATGGGATTGACTTCGGACTTTGGGCATT
TCTATGTGGGAAGTCAAAATGTGAGTGAGAACGATATGTTGCATGCTTTG
GTAACAAGGCTAGAGCGATCAACTATGACAATTGATTCAAGTTCCCAAAC
ATTTTTGGTAGAGACTGGTTCATCTCTTTCAACAGTTCCATGTTTTGGCG
TGGAAGTTCTTTTGAACGCAGGAAATGTGGATATTACTGCCACGGATCGG
TGTGACACTTCAAACCCAGGGCCTCGACCAGCTTTTATCCCATTCTACAT
ATTTGAATTGGTGCACTCCATCATGTTTCCCACTGTGAAGGGTATGGGAA
GACGCCTGTCTCCCTCCGAGACTCACATGTTGAACAATATGGTAGTCCAC
AACAGACCGTGGATTGGAATCGTGCTCATTATAATCATAAGTTCCACTTT
GTTCTGCGCATGGGCTTTGCTCACTGCATTTGGTTTGGAAGGTGGCGTGG
ACTCGCAATGGGCGTGGAAAGAGTTCTTCAAAGATATACGCTCGACAGAC
GACTTTGGGAGAGGACAAGATGAGGAGCAAGAAATGCAGTGGAGGTGCCA
TGAGAGCGGGTCTCTAACCTTCGGATTCACACCAGTTGCACATCAGGTGT
GA