Ggra5326.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5326.t1
Unique NameGgra5326.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length614
Homology
BLAST of Ggra5326.t1 vs. uniprot
Match: R7QMQ2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMQ2_CHOCR)

HSP 1 Score: 481 bits (1238), Expect = 5.740e-163
Identity = 241/390 (61.79%), Postives = 293/390 (75.13%), Query Frame = 0
Query:  225 EAWSIALWRAWWTQDTSPRNSRELIVSEGR-FRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGT--QTRITTKEQWAELLTTYGSDEGQQDTHGGALRGIMDPSTACGIALLIHEKTNRVPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDIASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEARWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRSMLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMACQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARFGSSNAWRYPHT 611
            EAW++A WRAWWTQDT   + +   +S    FRCD+ HRKPNV +LL T   G    TD       R V+D  +  Q  +TT+EQWA  L TYG+ EGQQDTHG     +++ +TA GIA+++ EKT   PNRMS+LWY TA+FEE Y    +E  +  +F  ++FPSW SWL +AQD+ +HL RP+YLSD  L  +AGELASASLI+ RY  +YR+LV+ I++ GL+ARWTFGWSGLLACFT LWTKERI +AMLNGLSLLAL S  ++E++DPNVRSMLYGYAAF VS RAVGKRIAEDRK ELL+RY    GKTCRGSGVCA R+AC  LK+PAEASHMDGLPAF  GWASE++E KPGNQKPEHG +HD+VE + GSSNAWRYPH+
Sbjct:   37 EAWAVAAWRAWWTQDTGLLHWQVNNLSAPESFRCDKEHRKPNVENLL-TRQRGPSWPTD-------RPVIDTKSEGQPTVTTREQWANCLLTYGTAEGQQDTHGECPSSVVNFNTAAGIAVVVREKTRFPPNRMSSLWYTTARFEELYEEKAQEVRKMSEFRDVLFPSWTSWLNIAQDVGTHLSRPVYLSDSYLINFAGELASASLIVVRYPEKYRKLVDQIYEDGLDARWTFGWSGLLACFTQLWTKERIHIAMLNGLSLLALNSGQEVEHIDPNVRSMLYGYAAFAVSTRAVGKRIAEDRKVELLRRYTTESGKTCRGSGVCATRLACSILKIPAEASHMDGLPAFATGWASEYMEFKPGNQKPEHGESHDDVEMKHGSSNAWRYPHS 418          
BLAST of Ggra5326.t1 vs. uniprot
Match: R7QFI2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFI2_CHOCR)

HSP 1 Score: 396 bits (1018), Expect = 9.710e-128
Identity = 217/576 (37.67%), Postives = 336/576 (58.33%), Query Frame = 0
Query:   50 WWILIITLATALPWAVVAVWDAIDASYRTKNEVAIRLLVSTTCLSIAYAFGLLFSVSLVFYLIKCHGQERQDEVAAVLALLLFNVWHIGRNFFGWTQFFAIHKLHNPFVVLQNNFAISFPG-LRGACPKKDCIQGLEQLRVSNRLFDNEWGHKTPYLSPFFK------IALPLSPSTPTPEY-----EAWSIALWRAWWTQDTSPRNSRELIVSEGRFRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGTQTRITTKEQWAELLTTYGSDE----GQQDTHGGALRGIMDPSTACGIALLIHEKTNRVPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDIASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEARWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRSMLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMACQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARFGSSNAWRYP 609
            W  +++T+A  LPWA+V V+DAID+ YRT    A RLL ST  L ++YA  L F +          G    DE  A+L L++FN+W++ RN  GW Q  A+ ++   FV++  N   SF   L G          +  + VS RL DN++   TP+L PF K      +   LS  +   +Y     E +++A+W+AWWTQD S   +   + +  R           +   +  YP          G  +     +Q  +  ++ +++W ELL +Y +      GQQDT       +++   +  +AL++ EK+ R PNR+S LW+NTA+FE+ Y    +  +E E+  +++ P+W+SW+Q+AQDI+++L RP+YL+  +LT +A EL++AS+IL RY  +Y++LVE IH  GL ARWT+GWSGLL+CF+ LWT ERI+ AMLNGLSLLA++   ++  +D N+R+MLYGYA+F VSDRA+G++I + +++E+ +R+  N G T RG G+  +R AC+ L +P +   MDG  A    WA ++++ + G      G  H+E++   GSS AWRYP
Sbjct:   13 WLFILLTVAITLPWAIVPVYDAIDSKYRTIQATACRLLTSTLLLVVSYAAALFFIIH--------EGVVAGDETIAILVLIIFNLWYVLRNIRGWLQLLALRRVKPAFVLMHKNIFSSFSAELAG-----HSTSPIRTVLVSERLIDNDFMSDTPFLQPFPKLYGNPRVDNNLSGYSEERKYQIQTVEIFAVAIWKAWWTQDISILQAENDLSANSR-----------LTHGISFYPKTENLDASLGGPRYPAGFCEQAEEEGLSARQKWIELLASYSTASNRVVGQQDTPQDPTADMINYDFSHVVALVVEEKSIRKPNRISILWHNTARFEKVYEDNRKALIEEEEIPNVVLPTWSSWVQIAQDISTNLCRPVYLNGSLLTNFAAELSAASVILLRYPEKYKRLVEQIHMDGLNARWTYGWSGLLSCFSALWTMERIYFAMLNGLSLLAISGNGEVANIDKNIRAMLYGYASFAVSDRAIGEKIKDLQQKEMSRRHVANLGVTFRGYGLDTVRRACKRLGIPRDVRFMDGPLALSVAWAMQYLDGECGLDTLTQGNTHEEIDRLLGSSTAWRYP 564          
BLAST of Ggra5326.t1 vs. uniprot
Match: A0A1X6PDL7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDL7_PORUM)

HSP 1 Score: 344 bits (882), Expect = 1.410e-108
Identity = 202/510 (39.61%), Postives = 276/510 (54.12%), Query Frame = 0
Query:  130 LLFNVWHIGRNFFGWTQFFAIHKLHNPFVVLQNNFAISFPGL--RGACPKKDCI---QGLEQLRVSNRLFDNEWGHKTPYLSPFFKIALPLSPSTPTPEYEAWSIALWRAWWTQDTSPR------NSRELIVSEGRFRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGTQTRITTKEQWAELLTTYGSDE-----------------GQQDTHGGAL--RGIMDPSTACGIALLIHEKTNRVPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDIASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEARWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRSMLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMACQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARFGSSNAWRYP 609
            + FN+W + RN  GWTQ  A+ +L   F  + +NF +S P    R + P        Q L  LRVS+ L DN     TP+L+PF   +              W+IA WRAWWTQD + R      ++    +    F  D ++  P     +D    G +P++                   I + ++W   L  YG +                  G QDT G     R ++D +   G+  L++EKT  VP+RMS+LWY T  F +R+           +  SL  PS +SW  +A  I      P+YLS + L  YA ELA+ SL+L+R+   +++L + I++ G +ARWTFGWSGLLACF++LWT+ER++VA  NGLSLLAL     +  +   VRS L  Y +F VS RA+G+RIA  R+ ELL+RY  N+G+TCRGSGV AIR  C  L LP  ASHMDGLPAF AGW  E++ER+PGNQ P +G +H+EVE R GS  AWRYP
Sbjct:    1 MFFNLWLVARNIRGWTQLAALRRLDTHFSRILHNFFVSVPNESHRRSTPAIRAALLAQPLSTLRVSSALIDNNVTSATPWLNPFAATS------------RTWAIAFWRAWWTQDPTGRATLSAPSTYNTTLHSIAFDLD-INHWPEAVHAVD----GCQPHSPV-----------------IRSADEWVHALKVYGDEPPLTPTGAPNPRFPGPAAGMQDTAGTLTLPRPLLDTAGTRGVVTLVYEKTAHVPHRMSSLWYGTTTFTDRFHEASRRADGGGR--SLRIPSLSSWRVMAVGIGERSPVPLYLSGMDLENYACELAATSLLLARFPTAFKRLCDQIYEDGRKARWTFGWSGLLACFSNLWTRERVYVAAANGLSLLALGCAPSVVKIPDCVRSTLVAYTSFAVSTRAIGRRIAPARQVELLRRYATNRGRTCRGSGVDAIRRGCAVLGLPGAASHMDGLPAFTAGWCLEYMERQPGNQPPAYGADHEEVERRLGSGTAWRYP 474          
BLAST of Ggra5326.t1 vs. uniprot
Match: A0A1X6PDH2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDH2_PORUM)

HSP 1 Score: 279 bits (713), Expect = 1.460e-85
Identity = 146/297 (49.16%), Postives = 190/297 (63.97%), Query Frame = 0
Query:  315 GSDEGQQDTHGGAL--RGIMDPSTACGIALLIHEKTNRVPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDIASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEARWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRSMLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMACQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARFGSSNAWRYP 609
            G   G QDT G     R ++D +   G+  L++EKT  VP+RMS+LWY T  F + +           +  SL  PS  SW  +A  I      P+YLS + L  YA ELA+  L+L+R+   +++L + I++ G +ARWTFGWSGLLACF++LWT ER++VA  NGLSLLAL     +  +   VRS L  Y +F VS RA+G+RIA  R+ ELL+RY  N+G+TCRGSGV AIR  C  L LP  ASHMDGLPAF AGW  E++ER+PGNQ P +G +H+EVE R GS  AWRYP
Sbjct:   21 GPAAGMQDTAGTLTLPRPLLDTAGTRGVVTLVYEKTAHVPHRMSSLWYGTTTFTDCFHEASRRADGGGR--SLRIPSLTSWRVMAVGIGERSPVPLYLSGMDLENYACELAATPLLLARFPTAFKRLCDQIYEDGRKARWTFGWSGLLACFSNLWTHERVYVAAANGLSLLALGCAPSVVKIPDCVRSTLVAYTSFAVSTRAIGRRIAPARQVELLRRYATNRGRTCRGSGVDAIRRGCAVLGLPGAASHMDGLPAFTAGWCLEYMERQPGNQPPAYGADHEEVERRLGSGTAWRYP 315          
BLAST of Ggra5326.t1 vs. uniprot
Match: D7FHB4 (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB4_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.110e-44
Identity = 105/290 (36.21%), Postives = 150/290 (51.72%), Query Frame = 0
Query:  302 TTKEQWAELLTTYGSDEGQQDTHGGALRGIMDPSTACGIALLIHEKTNRVPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDIASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEARWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRSMLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMACQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGL 591
            T  +Q  + L  YG +EGQQD  G  +      S    I  ++   T   P  M  +WY + +       +  +      + S  FP   SW ++A+DIA   + P+ LS      +A  +AS+S +L+    EY  LV  ++  G+ ARWT GWSG L+C++ LWT   + +A+L GL+LL +        +  +VR +L G A+  +  R +  ++   R +EL  RY  NKGKTCRGSGV  +R AC  L LP  AS +DG  AF  GWA E IE  PGNQ P  G+
Sbjct:  104 TAIKQRQDSLKIYGGEEGQQD-RGEKMMPNHPESRVQTIWEMMTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPS--FPGIESWFRIAKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPGEYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRK----NVVTDSVRCLLVGMASDTIMGRYLPDKVRAARTKELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIEGLPGNQAPRDGI 386          
The following BLAST results are available for this feature:
BLAST of Ggra5326.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R7QMQ25.740e-16361.79Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QFI29.710e-12837.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PDL71.410e-10839.61Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6PDH21.460e-8549.16Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
D7FHB44.110e-4436.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 517..537
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 581..613
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 581..596
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..83
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 113..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..613
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..49
NoneNo IPR availableTMHMMTMhelixcoord: 50..69
NoneNo IPR availableTMHMMTMhelixcoord: 82..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:99347..101260 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1Ggra5326.t1Gracilaria gracilis GNS1m malemRNAtig00000172_pilon 99347..101260 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=614bp
MLPPSLLLLPHAVVLPAADHAVLNQTTASFSSLCDADNNHPLIGTFIKSW
WILIITLATALPWAVVAVWDAIDASYRTKNEVAIRLLVSTTCLSIAYAFG
LLFSVSLVFYLIKCHGQERQDEVAAVLALLLFNVWHIGRNFFGWTQFFAI
HKLHNPFVVLQNNFAISFPGLRGACPKKDCIQGLEQLRVSNRLFDNEWGH
KTPYLSPFFKIALPLSPSTPTPEYEAWSIALWRAWWTQDTSPRNSRELIV
SEGRFRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGTQTR
ITTKEQWAELLTTYGSDEGQQDTHGGALRGIMDPSTACGIALLIHEKTNR
VPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDI
ASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEA
RWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRS
MLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMA
CQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARF
GSSNAWRYPHTQT*
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