Ggra5326.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5326.t1
Unique NameGgra5326.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:99347..101260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5326Ggra5326Gracilaria gracilis GNS1m malegenetig00000172_pilon 99347..101260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1Ggra5326.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 99347..101260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1.stop1Ggra5326.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 99347..99349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1.CDS1Ggra5326.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 99347..100371 -
Ggra5326.t1.CDS2Ggra5326.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000172_pilon 100444..101260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1.exon1Ggra5326.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 99347..100371 -
Ggra5326.t1.exon2Ggra5326.t1.exon2Gracilaria gracilis GNS1m maleexontig00000172_pilon 100444..101260 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1.intron1Ggra5326.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000172_pilon 100372..100443 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5326.t1.start1Ggra5326.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 101258..101260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=614bp
MLPPSLLLLPHAVVLPAADHAVLNQTTASFSSLCDADNNHPLIGTFIKSW
WILIITLATALPWAVVAVWDAIDASYRTKNEVAIRLLVSTTCLSIAYAFG
LLFSVSLVFYLIKCHGQERQDEVAAVLALLLFNVWHIGRNFFGWTQFFAI
HKLHNPFVVLQNNFAISFPGLRGACPKKDCIQGLEQLRVSNRLFDNEWGH
KTPYLSPFFKIALPLSPSTPTPEYEAWSIALWRAWWTQDTSPRNSRELIV
SEGRFRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGTQTR
ITTKEQWAELLTTYGSDEGQQDTHGGALRGIMDPSTACGIALLIHEKTNR
VPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDI
ASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEA
RWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRS
MLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMA
CQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARF
GSSNAWRYPHTQT*
back to top

spliced messenger RNA

>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00000172_pilon:99347..101260- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGCCCTCCTTGCTTCTGCTTCCGCACGCAGTCGTCTTACCCGC
CGCGGATCATGCCGTGCTCAACCAAACCACCGCCTCCTTCTCCTCCTTAT
GTGACGCCGACAACAACCACCCTCTCATAGGCACCTTCATCAAGAGCTGG
TGGATTCTCATCATCACCCTCGCCACCGCCCTGCCCTGGGCCGTCGTCGC
CGTCTGGGATGCAATCGATGCCTCGTACCGCACCAAGAACGAGGTCGCCA
TAAGACTGCTTGTCTCCACCACCTGCCTCTCGATTGCTTACGCCTTCGGT
CTACTATTTTCCGTCTCGCTGGTCTTCTACCTCATCAAATGTCACGGCCA
GGAACGCCAAGATGAGGTAGCCGCCGTGCTCGCTCTCCTGCTCTTCAACG
TGTGGCACATCGGACGCAACTTCTTCGGATGGACGCAGTTCTTCGCCATT
CACAAGCTACACAACCCGTTCGTAGTGCTACAAAACAACTTTGCAATTTC
CTTTCCAGGTCTTCGCGGAGCGTGTCCGAAGAAGGACTGCATACAGGGGC
TGGAACAGCTTCGCGTTTCCAACCGCCTGTTTGACAACGAGTGGGGTCAT
AAGACGCCTTATCTCAGCCCGTTCTTCAAGATTGCGCTGCCGCTATCGCC
CTCCACCCCCACACCGGAGTATGAGGCATGGTCCATTGCACTATGGAGGG
CGTGGTGGACGCAGGATACTTCGCCGCGAAACTCTCGTGAACTAATTGTC
TCTGAGGGAAGGTTCCGCTGTGACCGATTGCACCGCAAACCAAACGTCGC
CGATTTGCTCGATACCTACCCTAGCGGACTTGAACCTTACACAGATGAAA
GCGGAACGCTTCATGAGCGCGTGGTGATGGACCAGGGCACCCAAACACGA
ATCACTACAAAAGAGCAATGGGCAGAGTTGCTTACCACGTACGGCTCCGA
CGAAGGTCAGCAAGACACGCACGGTGGCGCGCTACGGGGCATTATGGACC
CGTCCACAGCATGCGGCATTGCGCTGCTCATCCACGAAAAAACCAACCGT
GTGCCGAACCGAATGAGTGCGTTGTGGTATAACACAGCCAAGTTTGAGGA
ACGATACCGCGTACTCTGCGAAGAAACAATGGAAAGCGAGCAATTCGCAA
GCTTGATGTTTCCTTCCTGGGCCAGTTGGCTGCAGTTGGCGCAGGATATT
GCGTCGCATCTTGAACGACCCATGTATCTGAGCGACGTGATTCTCACGGT
GTATGCAGGCGAATTGGCAAGTGCCAGCCTGATTCTGAGCCGATATTTTG
TGGAGTATAGGCAGTTGGTGGAAATCATTCATCAGACTGGCCTGGAAGCG
CGCTGGACTTTTGGGTGGAGCGGGCTGTTGGCGTGCTTCACACACCTGTG
GACCAAAGAACGAATCTTCGTGGCGATGCTCAACGGCCTCTCGCTACTGG
CACTGACGTCGACAAACGACCTGGAGTACCTGGACCCCAACGTGAGGTCG
ATGCTGTACGGCTACGCGGCGTTCGAAGTGAGCGACCGCGCCGTGGGCAA
GCGCATCGCGGAGGACCGAAAGGAAGAACTGCTGAAGCGGTACAAGGAAA
ACAAGGGCAAGACGTGCCGAGGGAGCGGCGTATGCGCCATCCGCATGGCC
TGTCAGGCGCTCAAACTGCCGGCGGAGGCCAGCCATATGGACGGGCTGCC
CGCGTTCTGTGCCGGCTGGGCTAGCGAGTTCATCGAGAGGAAACCGGGCA
ACCAGAAGCCGGAGCACGGGCTCAACCACGACGAGGTGGAGGCGCGTTTC
GGGAGTAGCAACGCGTGGCGCTATCCGCACACGCAGACATGA
back to top

protein sequence of Ggra5326.t1

>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=614bp
MLPPSLLLLPHAVVLPAADHAVLNQTTASFSSLCDADNNHPLIGTFIKSW
WILIITLATALPWAVVAVWDAIDASYRTKNEVAIRLLVSTTCLSIAYAFG
LLFSVSLVFYLIKCHGQERQDEVAAVLALLLFNVWHIGRNFFGWTQFFAI
HKLHNPFVVLQNNFAISFPGLRGACPKKDCIQGLEQLRVSNRLFDNEWGH
KTPYLSPFFKIALPLSPSTPTPEYEAWSIALWRAWWTQDTSPRNSRELIV
SEGRFRCDRLHRKPNVADLLDTYPSGLEPYTDESGTLHERVVMDQGTQTR
ITTKEQWAELLTTYGSDEGQQDTHGGALRGIMDPSTACGIALLIHEKTNR
VPNRMSALWYNTAKFEERYRVLCEETMESEQFASLMFPSWASWLQLAQDI
ASHLERPMYLSDVILTVYAGELASASLILSRYFVEYRQLVEIIHQTGLEA
RWTFGWSGLLACFTHLWTKERIFVAMLNGLSLLALTSTNDLEYLDPNVRS
MLYGYAAFEVSDRAVGKRIAEDRKEELLKRYKENKGKTCRGSGVCAIRMA
CQALKLPAEASHMDGLPAFCAGWASEFIERKPGNQKPEHGLNHDEVEARF
GSSNAWRYPHTQT*
back to top

mRNA from alignment at tig00000172_pilon:99347..101260-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00000172_pilon:99347..101260- (Gracilaria gracilis GNS1m male)
ATGCTGCCGCCCTCCTTGCTTCTGCTTCCGCACGCAGTCGTCTTACCCGC
CGCGGATCATGCCGTGCTCAACCAAACCACCGCCTCCTTCTCCTCCTTAT
GTGACGCCGACAACAACCACCCTCTCATAGGCACCTTCATCAAGAGCTGG
TGGATTCTCATCATCACCCTCGCCACCGCCCTGCCCTGGGCCGTCGTCGC
CGTCTGGGATGCAATCGATGCCTCGTACCGCACCAAGAACGAGGTCGCCA
TAAGACTGCTTGTCTCCACCACCTGCCTCTCGATTGCTTACGCCTTCGGT
CTACTATTTTCCGTCTCGCTGGTCTTCTACCTCATCAAATGTCACGGCCA
GGAACGCCAAGATGAGGTAGCCGCCGTGCTCGCTCTCCTGCTCTTCAACG
TGTGGCACATCGGACGCAACTTCTTCGGATGGACGCAGTTCTTCGCCATT
CACAAGCTACACAACCCGTTCGTAGTGCTACAAAACAACTTTGCAATTTC
CTTTCCAGGTCTTCGCGGAGCGTGTCCGAAGAAGGACTGCATACAGGGGC
TGGAACAGCTTCGCGTTTCCAACCGCCTGTTTGACAACGAGTGGGGTCAT
AAGACGCCTTATCTCAGCCCGTTCTTCAAGATTGCGCTGCCGCTATCGCC
CTCCACCCCCACACCGGAGTATGAGGCATGGTCCATTGCACTATGGAGGG
CGTGGTGGACGCAGGATACTTCGCCGCGAAACTCTCGTGAACTAATTGTC
TCTGAGGGAAGGTTCCGCTGTGACCGATTGCACCGCAAACCAAACGTCGC
CGATTTGCTCGATACCTGTACGTATACCTCTCTTGTCACACTTGCCCATA
CATTACCTCTGACCACTAACGAAACCAATATGATATTAGACCCTAGCGGA
CTTGAACCTTACACAGATGAAAGCGGAACGCTTCATGAGCGCGTGGTGAT
GGACCAGGGCACCCAAACACGAATCACTACAAAAGAGCAATGGGCAGAGT
TGCTTACCACGTACGGCTCCGACGAAGGTCAGCAAGACACGCACGGTGGC
GCGCTACGGGGCATTATGGACCCGTCCACAGCATGCGGCATTGCGCTGCT
CATCCACGAAAAAACCAACCGTGTGCCGAACCGAATGAGTGCGTTGTGGT
ATAACACAGCCAAGTTTGAGGAACGATACCGCGTACTCTGCGAAGAAACA
ATGGAAAGCGAGCAATTCGCAAGCTTGATGTTTCCTTCCTGGGCCAGTTG
GCTGCAGTTGGCGCAGGATATTGCGTCGCATCTTGAACGACCCATGTATC
TGAGCGACGTGATTCTCACGGTGTATGCAGGCGAATTGGCAAGTGCCAGC
CTGATTCTGAGCCGATATTTTGTGGAGTATAGGCAGTTGGTGGAAATCAT
TCATCAGACTGGCCTGGAAGCGCGCTGGACTTTTGGGTGGAGCGGGCTGT
TGGCGTGCTTCACACACCTGTGGACCAAAGAACGAATCTTCGTGGCGATG
CTCAACGGCCTCTCGCTACTGGCACTGACGTCGACAAACGACCTGGAGTA
CCTGGACCCCAACGTGAGGTCGATGCTGTACGGCTACGCGGCGTTCGAAG
TGAGCGACCGCGCCGTGGGCAAGCGCATCGCGGAGGACCGAAAGGAAGAA
CTGCTGAAGCGGTACAAGGAAAACAAGGGCAAGACGTGCCGAGGGAGCGG
CGTATGCGCCATCCGCATGGCCTGTCAGGCGCTCAAACTGCCGGCGGAGG
CCAGCCATATGGACGGGCTGCCCGCGTTCTGTGCCGGCTGGGCTAGCGAG
TTCATCGAGAGGAAACCGGGCAACCAGAAGCCGGAGCACGGGCTCAACCA
CGACGAGGTGGAGGCGCGTTTCGGGAGTAGCAACGCGTGGCGCTATCCGC
ACACGCAGACATGA
back to top

Coding sequence (CDS) from alignment at tig00000172_pilon:99347..101260-

>Ggra5326.t1 ID=Ggra5326.t1|Name=Ggra5326.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1842bp|location=Sequence derived from alignment at tig00000172_pilon:99347..101260- (Gracilaria gracilis GNS1m male)
ATGCTGCCGCCCTCCTTGCTTCTGCTTCCGCACGCAGTCGTCTTACCCGC
CGCGGATCATGCCGTGCTCAACCAAACCACCGCCTCCTTCTCCTCCTTAT
GTGACGCCGACAACAACCACCCTCTCATAGGCACCTTCATCAAGAGCTGG
TGGATTCTCATCATCACCCTCGCCACCGCCCTGCCCTGGGCCGTCGTCGC
CGTCTGGGATGCAATCGATGCCTCGTACCGCACCAAGAACGAGGTCGCCA
TAAGACTGCTTGTCTCCACCACCTGCCTCTCGATTGCTTACGCCTTCGGT
CTACTATTTTCCGTCTCGCTGGTCTTCTACCTCATCAAATGTCACGGCCA
GGAACGCCAAGATGAGGTAGCCGCCGTGCTCGCTCTCCTGCTCTTCAACG
TGTGGCACATCGGACGCAACTTCTTCGGATGGACGCAGTTCTTCGCCATT
CACAAGCTACACAACCCGTTCGTAGTGCTACAAAACAACTTTGCAATTTC
CTTTCCAGGTCTTCGCGGAGCGTGTCCGAAGAAGGACTGCATACAGGGGC
TGGAACAGCTTCGCGTTTCCAACCGCCTGTTTGACAACGAGTGGGGTCAT
AAGACGCCTTATCTCAGCCCGTTCTTCAAGATTGCGCTGCCGCTATCGCC
CTCCACCCCCACACCGGAGTATGAGGCATGGTCCATTGCACTATGGAGGG
CGTGGTGGACGCAGGATACTTCGCCGCGAAACTCTCGTGAACTAATTGTC
TCTGAGGGAAGGTTCCGCTGTGACCGATTGCACCGCAAACCAAACGTCGC
CGATTTGCTCGATACCTACCCTAGCGGACTTGAACCTTACACAGATGAAA
GCGGAACGCTTCATGAGCGCGTGGTGATGGACCAGGGCACCCAAACACGA
ATCACTACAAAAGAGCAATGGGCAGAGTTGCTTACCACGTACGGCTCCGA
CGAAGGTCAGCAAGACACGCACGGTGGCGCGCTACGGGGCATTATGGACC
CGTCCACAGCATGCGGCATTGCGCTGCTCATCCACGAAAAAACCAACCGT
GTGCCGAACCGAATGAGTGCGTTGTGGTATAACACAGCCAAGTTTGAGGA
ACGATACCGCGTACTCTGCGAAGAAACAATGGAAAGCGAGCAATTCGCAA
GCTTGATGTTTCCTTCCTGGGCCAGTTGGCTGCAGTTGGCGCAGGATATT
GCGTCGCATCTTGAACGACCCATGTATCTGAGCGACGTGATTCTCACGGT
GTATGCAGGCGAATTGGCAAGTGCCAGCCTGATTCTGAGCCGATATTTTG
TGGAGTATAGGCAGTTGGTGGAAATCATTCATCAGACTGGCCTGGAAGCG
CGCTGGACTTTTGGGTGGAGCGGGCTGTTGGCGTGCTTCACACACCTGTG
GACCAAAGAACGAATCTTCGTGGCGATGCTCAACGGCCTCTCGCTACTGG
CACTGACGTCGACAAACGACCTGGAGTACCTGGACCCCAACGTGAGGTCG
ATGCTGTACGGCTACGCGGCGTTCGAAGTGAGCGACCGCGCCGTGGGCAA
GCGCATCGCGGAGGACCGAAAGGAAGAACTGCTGAAGCGGTACAAGGAAA
ACAAGGGCAAGACGTGCCGAGGGAGCGGCGTATGCGCCATCCGCATGGCC
TGTCAGGCGCTCAAACTGCCGGCGGAGGCCAGCCATATGGACGGGCTGCC
CGCGTTCTGTGCCGGCTGGGCTAGCGAGTTCATCGAGAGGAAACCGGGCA
ACCAGAAGCCGGAGCACGGGCTCAACCACGACGAGGTGGAGGCGCGTTTC
GGGAGTAGCAACGCGTGGCGCTATCCGCACACGCAGACATGA
back to top