Ggra5217.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5217.t1
Unique NameGgra5217.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Homology
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BLAST of Ggra5217.t1 vs. uniprot
Match: A0A2V3J767 (Cyclin-F n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J767_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 2.110e-54
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0 
Query:   43 YPAPSPATPDHLPDEVLLSIFERLSTARDIAAVRNVCTSWRTLVDNTSSIWRSLVFELPRCPSSARCAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPILPTHPFAV 152
            YP     T   LPDEVLLSIFERLS  +DIAAVR+VCTSWR LVD  S+IWRS+VFELPRC SSAR AELWYRKAADYGNAQAQFLLALLYTYGYGRPS+P LPTHP  V
Sbjct:   35 YPPALRVTTAQLPDEVLLSIFERLSRVKDIAAVRSVCTSWRALVDTNSAIWRSIVFELPRCRSSARYAELWYRKAADYGNAQAQFLLALLYTYGYGRPSRPALPTHPVIV 144
The following BLAST results are available for this feature:
BLAST of Ggra5217.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J7672.110e-5479.09Cyclin-F n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 54..95
e-value: 1.1E-9
score: 48.1
IPR001810F-box domainPFAMPF12937F-box-likecoord: 52..98
e-value: 7.4E-14
score: 51.4
IPR001810F-box domainPROSITEPS50181FBOXcoord: 48..96
score: 11.749494
NoneNo IPR availableGENE3D1.20.1280.50coord: 50..96
e-value: 1.4E-11
score: 46.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..152
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 110..140
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 101..144
e-value: 1.4E-6
score: 30.2
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 36..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:792635..793227 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1Ggra5217.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 792635..793227 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MDGSSREERLCHSVGLASFLRPPLARRQLLLLPPPPPSPPRVYPAPSPAT
PDHLPDEVLLSIFERLSTARDIAAVRNVCTSWRTLVDNTSSIWRSLVFEL
PRCPSSARCAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPILPTHPF
AV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR011990TPR-like_helical_dom_sf
IPR036047F-box-like_dom_sf