Ggra5217.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5217.t1
Unique NameGgra5217.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:792635..793227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5217Ggra5217Gracilaria gracilis GNS1m malegenetig00000069_pilon 792635..793227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1Ggra5217.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 792635..793227 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1.stop1Ggra5217.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 792635..792637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1.CDS1Ggra5217.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 792635..792715 -
Ggra5217.t1.CDS2Ggra5217.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 792850..793227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1.exon1Ggra5217.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 792635..792715 -
Ggra5217.t1.exon2Ggra5217.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 792850..793227 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1.intron1Ggra5217.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 792716..792849 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5217.t1.start1Ggra5217.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 793225..793227 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=153bp
MDGSSREERLCHSVGLASFLRPPLARRQLLLLPPPPPSPPRVYPAPSPAT
PDHLPDEVLLSIFERLSTARDIAAVRNVCTSWRTLVDNTSSIWRSLVFEL
PRCPSSARCAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPILPTHPF
AV*
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spliced messenger RNA

>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00000069_pilon:792635..793227- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGCTCCTCGAGGGAAGAGCGCCTCTGCCATAGCGTGGGCTTGGC
GTCGTTCTTACGACCGCCGCTGGCGCGAAGGCAGTTGCTGTTGCTGCCGC
CACCGCCGCCCTCGCCGCCGCGCGTTTATCCCGCCCCTTCTCCAGCCACG
CCGGACCACTTGCCGGATGAGGTGCTGTTGTCCATTTTTGAACGTCTTTC
AACCGCGAGGGATATTGCTGCTGTGAGGAATGTCTGTACTTCTTGGAGGA
CGTTGGTGGATAACACCAGTTCCATCTGGCGTTCGCTTGTGTTTGAATTG
CCGAGGTGTCCTTCCTCGGCCCGATGTGCCGAGCTGTGGTACCGGAAGGC
TGCCGACTATGGTAACGCTCAGGCTCAGTTTTTGCTAGCCCTTTTGTATA
CGTATGGTTACGGTCGCCCATCGCAGCCCATCCTGCCGACGCATCCTTTC
GCTGTGTAG
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protein sequence of Ggra5217.t1

>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MDGSSREERLCHSVGLASFLRPPLARRQLLLLPPPPPSPPRVYPAPSPAT
PDHLPDEVLLSIFERLSTARDIAAVRNVCTSWRTLVDNTSSIWRSLVFEL
PRCPSSARCAELWYRKAADYGNAQAQFLLALLYTYGYGRPSQPILPTHPF
AV*
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mRNA from alignment at tig00000069_pilon:792635..793227-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp|location=Sequence derived from alignment at tig00000069_pilon:792635..793227- (Gracilaria gracilis GNS1m male)
ATGGACGGCTCCTCGAGGGAAGAGCGCCTCTGCCATAGCGTGGGCTTGGC
GTCGTTCTTACGACCGCCGCTGGCGCGAAGGCAGTTGCTGTTGCTGCCGC
CACCGCCGCCCTCGCCGCCGCGCGTTTATCCCGCCCCTTCTCCAGCCACG
CCGGACCACTTGCCGGATGAGGTGCTGTTGTCCATTTTTGAACGTCTTTC
AACCGCGAGGGATATTGCTGCTGTGAGGAATGTCTGTACTTCTTGGAGGA
CGTTGGTGGATAACACCAGTTCCATCTGGCGTTCGCTTGTGTTTGAATTG
CCGAGGTGTCCTTCCTCGGCCCGATGTGCCGAGCTGTGGTACCGGAAGGC
TGCCGACTATGGTAACGCTCAGGCTCAGGTTCGTTTTCTTTCTGTTGCTG
TCTGCTTTATTAACGGACGTATCCGCAATTCACTACGCAAGAGACTGACA
CCTCTTCCGTGCGCTTTTTCAACACGTCATGTGCAATGCGCTTTCTTCAA
CGCGTGCTCCAGTTTTTGCTAGCCCTTTTGTATACGTATGGTTACGGTCG
CCCATCGCAGCCCATCCTGCCGACGCATCCTTTCGCTGTGTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:792635..793227-

>Ggra5217.t1 ID=Ggra5217.t1|Name=Ggra5217.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00000069_pilon:792635..793227- (Gracilaria gracilis GNS1m male)
ATGGACGGCTCCTCGAGGGAAGAGCGCCTCTGCCATAGCGTGGGCTTGGC
GTCGTTCTTACGACCGCCGCTGGCGCGAAGGCAGTTGCTGTTGCTGCCGC
CACCGCCGCCCTCGCCGCCGCGCGTTTATCCCGCCCCTTCTCCAGCCACG
CCGGACCACTTGCCGGATGAGGTGCTGTTGTCCATTTTTGAACGTCTTTC
AACCGCGAGGGATATTGCTGCTGTGAGGAATGTCTGTACTTCTTGGAGGA
CGTTGGTGGATAACACCAGTTCCATCTGGCGTTCGCTTGTGTTTGAATTG
CCGAGGTGTCCTTCCTCGGCCCGATGTGCCGAGCTGTGGTACCGGAAGGC
TGCCGACTATGGTAACGCTCAGGCTCAGTTTTTGCTAGCCCTTTTGTATA
CGTATGGTTACGGTCGCCCATCGCAGCCCATCCTGCCGACGCATCCTTTC
GCTGTGTAG
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