Ggra5122.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5122.t1
Unique NameGgra5122.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Homology
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A2V3J739 (Small nuclear ribonucleoprotein E n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J739_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 7.430e-52
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAATR 87
            M+ RSKKIM QPINLIFRFLQNRT +EIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVE+HQKRDSRQKLGRILLKGDTITMMT ATR
Sbjct:   15 MSSRSKKIMVQPINLIFRFLQNRTLIEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEVHQKRDSRQKLGRILLKGDTITMMTTATR 101          
BLAST of Ggra5122.t1 vs. uniprot
Match: R7QU35 (Small nuclear ribonucleoprotein E n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QU35_CHOCR)

HSP 1 Score: 142 bits (357), Expect = 1.980e-42
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAATR 87
            M  R++KIMTQPI+LIFRFLQNRTRVEIWLYDN   RIQGCIIGFDEYMNLVLD+AVE+ +K  S  KLGRILLKGDTITM+TAA R
Sbjct:    1 MGSRAQKIMTQPISLIFRFLQNRTRVEIWLYDNPQTRIQGCIIGFDEYMNLVLDEAVEVVEKNSSSTKLGRILLKGDTITMLTAAPR 87          
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A8J5XBH6 (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBH6_DIALT)

HSP 1 Score: 127 bits (320), Expect = 8.700e-37
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTA 84
            MA R +K+MTQPINLIFRFLQN+TR+++WLY+ TD+RI+G IIGFDEYMNLVLDDA EI  K+ SR+ LGRILLKGD IT++ A
Sbjct:    1 MAGRVQKVMTQPINLIFRFLQNKTRIQVWLYEQTDLRIEGRIIGFDEYMNLVLDDAEEIALKKKSRKALGRILLKGDNITLLMA 84          
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A087SJG3 (Small nuclear ribonucleoprotein E n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJG3_AUXPR)

HSP 1 Score: 127 bits (319), Expect = 1.200e-36
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAA 85
            MAP+ K+IMTQPINLIFRFLQ+R +V+IWLYD+ D+RI+G IIGFDEYMNLVLD+  E+  KR +R+ LGRILLKGD IT+M AA
Sbjct:    1 MAPKVKRIMTQPINLIFRFLQSRQKVQIWLYDHNDLRIEGRIIGFDEYMNLVLDEGEEVSVKRQTRKPLGRILLKGDNITLMQAA 85          
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A7S0LPS2 (Small nuclear ribonucleoprotein E n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPS2_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 1.210e-36
Identity = 59/82 (71.95%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMM 82
            M+ + +KIMTQPINLIFRFLQN+TRV+IWL++NTD+RI+G I+GFDEYMNLVLDDA E+  K+ SR++LGRILLKGD IT+M
Sbjct:   23 MSTKVQKIMTQPINLIFRFLQNKTRVQIWLFENTDLRIEGRIVGFDEYMNLVLDDATELSIKKKSRKELGRILLKGDNITLM 104          
BLAST of Ggra5122.t1 vs. uniprot
Match: R1EMN3 (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 127 bits (318), Expect = 1.810e-36
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAA 85
            MA + +KIMTQPINLIFRFLQN+TRV+IWLY+NT++RI+G IIGFDEYMNLVLD+A E+  K+  R+ LGRILLKGD+IT+M  A
Sbjct:    1 MATKVQKIMTQPINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKKKERKPLGRILLKGDSITLMMTA 85          
BLAST of Ggra5122.t1 vs. uniprot
Match: E1ZJG0 (Small nuclear ribonucleoprotein E n=3 Tax=Chlorella clade TaxID=2511126 RepID=E1ZJG0_CHLVA)

HSP 1 Score: 126 bits (317), Expect = 2.420e-36
Identity = 59/85 (69.41%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAA 85
            M P+ K+IMTQPINLIFRFLQ+R +++IWLY++ D+RI+G IIGFDEYMNLVLD+A E+  KR +R+ LGRILLKGDTIT+M AA
Sbjct:    1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRKALGRILLKGDTITLMQAA 85          
BLAST of Ggra5122.t1 vs. uniprot
Match: D8LD43 (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.350e-36
Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    4 RSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMM 82
            R KK+MTQPI+LIFRFLQNRTRV+IWLY+NT +RI+G I+GFDEYMNLVLD+A E+  K D R++LGRI+LKGDTIT+M
Sbjct:   14 RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLM 92          
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A6U0Y1E1 (Small nuclear ribonucleoprotein E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y1E1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.760e-36
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 0
Query:    2 APRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAA 85
            + R KK+MTQPINLIFRFLQNRTR+ IWLY+N++  I+G I+GFDEYMNLVLDDA EI QK+++R  LGRILLKGDTIT+M  A
Sbjct:   10 STRVKKVMTQPINLIFRFLQNRTRILIWLYENSNTMIEGRIVGFDEYMNLVLDDAQEIDQKQETRTDLGRILLKGDTITLMQEA 93          
BLAST of Ggra5122.t1 vs. uniprot
Match: A0A401Q587 (Small nuclear ribonucleoprotein E n=4 Tax=Gnathostomata TaxID=7776 RepID=A0A401Q587_SCYTO)

HSP 1 Score: 125 bits (315), Expect = 5.830e-36
Identity = 54/84 (64.29%), Postives = 73/84 (86.90%), Query Frame = 0
Query:    2 APRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAA 85
            AP+ +K+M QPINLIFR+LQNR+R+++WL++  ++RI+GCIIGFDEYMNLVLDDA EIH K  SR+ LGR++LKGD IT++ +A
Sbjct:    7 APKVQKVMVQPINLIFRYLQNRSRIQVWLHEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKSKSRKLLGRVMLKGDNITLLQSA 90          
The following BLAST results are available for this feature:
BLAST of Ggra5122.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J7397.430e-5291.95Small nuclear ribonucleoprotein E n=1 Tax=Gracilar... [more]
R7QU351.980e-4279.31Small nuclear ribonucleoprotein E n=1 Tax=Chondrus... [more]
A0A8J5XBH68.700e-3771.43Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A087SJG31.200e-3670.59Small nuclear ribonucleoprotein E n=1 Tax=Auxenoch... [more]
A0A7S0LPS21.210e-3671.95Small nuclear ribonucleoprotein E n=1 Tax=Coccolit... [more]
R1EMN31.810e-3670.59Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
E1ZJG02.420e-3669.41Small nuclear ribonucleoprotein E n=3 Tax=Chlorell... [more]
D8LD433.350e-3673.42Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A6U0Y1E14.760e-3671.43Small nuclear ribonucleoprotein E n=1 Tax=Rhizochr... [more]
A0A401Q5875.830e-3664.29Small nuclear ribonucleoprotein E n=4 Tax=Gnathost... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 18..84
e-value: 6.9E-17
score: 72.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 19..83
e-value: 1.8E-16
score: 59.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 3.1E-36
score: 125.1
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..85
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..85
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 6..84
e-value: 6.77613E-49
score: 147.315
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:526684..527125 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1Ggra5122.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 526684..527125 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMN
LVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAATR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf