Ggra5122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5122.t1
Unique NameGgra5122.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:526684..527125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SJG3
PFAMsLSM
Max annot lvl3041|Chlorophyta
KEGG koko:K11097
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Evalue4.23e-37
EggNOG OGsCOG1958@1|root,KOG1774@2759|Eukaryota,37V9J@33090|Viridiplantae,34I7H@3041|Chlorophyta
DescriptionsnRNP Sm proteins
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5122Ggra5122Gracilaria gracilis GNS1m malegenetig00000069_pilon 526684..527125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1Ggra5122.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 526684..527125 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1.start1Ggra5122.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 526684..526686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1.CDS1Ggra5122.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 526684..526722 +
Ggra5122.t1.CDS2Ggra5122.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 526812..526901 +
Ggra5122.t1.CDS3Ggra5122.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 526991..527125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1.exon1Ggra5122.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 526684..526722 +
Ggra5122.t1.exon2Ggra5122.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 526812..526901 +
Ggra5122.t1.exon3Ggra5122.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 526991..527125 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1.intron1Ggra5122.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 526723..526811 +
Ggra5122.t1.intron2Ggra5122.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 526902..526990 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5122.t1.stop1Ggra5122.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 527123..527125 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMN
LVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAATR*
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spliced messenger RNA

>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000069_pilon:526684..527125+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCAAGGTCCAAGAAGATTATGACCCAGCCCATAAACCTAATCTT
TAGGTTTTTGCAGAACAGGACGCGAGTGGAGATTTGGCTCTACGACAACA
CAGATATTCGAATACAAGGTTGCATCATTGGTTTTGATGAGTACATGAAC
TTAGTCCTCGATGATGCCGTCGAGATACACCAGAAGCGAGATTCAAGGCA
GAAACTGGGACGGATTTTATTGAAAGGTGACACCATAACTATGATGACTG
CGGCCACGAGATGA
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protein sequence of Ggra5122.t1

>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMN
LVLDDAVEIHQKRDSRQKLGRILLKGDTITMMTAATR*
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mRNA from alignment at tig00000069_pilon:526684..527125+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp|location=Sequence derived from alignment at tig00000069_pilon:526684..527125+ (Gracilaria gracilis GNS1m male)
ATGGCACCAAGGTCCAAGAAGATTATGACCCAGCCCATAGTACGTTCTTG
AACACTGATGAAAGTCTTGTGGATTGGAACTAACCAGAATGAACTACTCA
TCTTTGTGCTTTTCGCTCAATCGAGTAGAACCTAATCTTTAGGTTTTTGC
AGAACAGGACGCGAGTGGAGATTTGGCTCTACGACAACACAGATATTCGA
ATACAAGGTTGCATCATTGTAAGTTTCTGGGAATTTCTATCGGAATATGG
CCCATGCTTGCCTTACTGACAAACAAAATACTACATATCTTTCTCGTTCT
CCGACAGGGTTTTGATGAGTACATGAACTTAGTCCTCGATGATGCCGTCG
AGATACACCAGAAGCGAGATTCAAGGCAGAAACTGGGACGGATTTTATTG
AAAGGTGACACCATAACTATGATGACTGCGGCCACGAGATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:526684..527125+

>Ggra5122.t1 ID=Ggra5122.t1|Name=Ggra5122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000069_pilon:526684..527125+ (Gracilaria gracilis GNS1m male)
ATGGCACCAAGGTCCAAGAAGATTATGACCCAGCCCATAAACCTAATCTT
TAGGTTTTTGCAGAACAGGACGCGAGTGGAGATTTGGCTCTACGACAACA
CAGATATTCGAATACAAGGTTGCATCATTGGTTTTGATGAGTACATGAAC
TTAGTCCTCGATGATGCCGTCGAGATACACCAGAAGCGAGATTCAAGGCA
GAAACTGGGACGGATTTTATTGAAAGGTGACACCATAACTATGATGACTG
CGGCCACGAGATGA
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