Ggra5088.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5088.t1
Unique NameGgra5088.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Homology
BLAST of Ggra5088.t1 vs. uniprot
Match: A0A2V3J6U3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U3_9FLOR)

HSP 1 Score: 332 bits (850), Expect = 1.620e-112
Identity = 157/210 (74.76%), Postives = 179/210 (85.24%), Query Frame = 0
Query:    1 MFLLALLPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCAGRHKEFPNGISGHYCYFIFVAFTASRYARRRLKANPNASPVIKALAAFFLMLFGIGGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKRLTILLANSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVICTYFVLSEERKVQKE 210
            MFLLALLPHAR KALFSLT+AS+WFH TYIYLAAFKAPL DFNCAGRHK +PNGISGHYCYFIFVAFTA+RYAR RLK+NPNASP IKA AA  + LFG+GGVATLYRTFFHGYHSARQIS+GASLGI +HC LD +LF++ +GF T  RL  LLANS TSLTLY+RLWPH +AGPAIS  +L+FH SLW IL++CTY++ + E    KE
Sbjct:   74 MFLLALLPHARPKALFSLTYASLWFHATYIYLAAFKAPLQDFNCAGRHKSYPNGISGHYCYFIFVAFTAARYARSRLKSNPNASPGIKAAAAALMSLFGVGGVATLYRTFFHGYHSARQISYGASLGIFAHCVLDYILFQEDSGFTTYLRLLFLLANSTTSLTLYFRLWPHEAAGPAISFGNLVFHASLWVILLVCTYYLRAAEENPAKE 283          
BLAST of Ggra5088.t1 vs. uniprot
Match: R7QBL7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBL7_CHOCR)

HSP 1 Score: 251 bits (640), Expect = 1.230e-80
Identity = 125/207 (60.39%), Postives = 146/207 (70.53%), Query Frame = 0
Query:    1 MFLLALLPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCAGRHKEFPNGISGHYCYFIFVAFTASRYARRRLKANPNASPVIKALAAFFLMLFGIGGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKRLTILLANSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVICTYFVLSEERKV 207
            MFLLALLP+ R KA++ LT+ S+WFHITYI LAA KAPL DF CAGRH+ FPNGISGHYCYFIFVA T  R+AR RL+ NPN S +  A  A  L LF +GG ATLYRTFFHGYHS RQI+ GA+LGI SH  LD   FED         L++L A+SL +LT YY LWPH  AG AI+  HL FH +LW +L+   Y   S +RKV
Sbjct:   74 MFLLALLPNGRLKAVYLLTYTSIWFHITYILLAALKAPLYDFACAGRHQFFPNGISGHYCYFIFVALTTPRFARTRLRLNPNTSRLYLAPIALLLTLFTVGGTATLYRTFFHGYHSPRQIALGAALGIFSHSVLDFFQFEDDAEPPITVSLSVLFASSLNALTSYYFLWPHVIAGAAITAGHLRFHAALWLVLLAAAYLRQSADRKV 280          
BLAST of Ggra5088.t1 vs. uniprot
Match: M2WV89 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WV89_GALSU)

HSP 1 Score: 117 bits (294), Expect = 2.450e-28
Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 0
Query:   11 RAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCA-GRHKEFPNGISGHYCYFIF--VAFTASRYARRRLKANPNASPVIKA---------LAAFFLMLFGIGGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKRLTILLA-------NSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVI 195
            +  A+F ++F S+WFH+TY +L   K  LDD  C+ GR    PN ISGHYCYF F  ++ T+    ++    +      +KA         ++  FL  F IG + T+YRTFFHGYHS RQI +G  LG LSH  ++ VL+E    F   + + ++L        N L   TL+   WP    G  +    ++ H+  W IL I
Sbjct:   84 KGAAIFLVSFVSLWFHLTYWFLLLVKGWLDDATCSFGRFIGQPNSISGHYCYFTFCFLSLTSLFQVKQLYWRDSRRGKQLKATLLWILENYISKLFLYTFIIGSIVTVYRTFFHGYHSLRQILYGLGLGCLSHALMETVLWEY---FIAGRHVLLILGILALLSPNLLFFCTLF---WPFPVYGYPVGSKQVMGHIINWLILFI 281          
BLAST of Ggra5088.t1 vs. uniprot
Match: A0A1X6PD70 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD70_PORUM)

HSP 1 Score: 115 bits (288), Expect = 1.650e-27
Identity = 73/217 (33.64%), Postives = 103/217 (47.47%), Query Frame = 0
Query:    7 LPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNC-AGRHKEFPNGISGHYCYFIFVAFTASRYARRRLK-----------------ANPNASPVIKA-----------LAAFFLMLFGIGGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKRLTILLANSLTSLTLYYRLWPHASAGP-AISPNHLIFHLSLWTIL 193
            LP  R KA+  +   ++WF  TY    A K  L D  C + R   +PNG+SGH+CYF FVA   + Y   RL                  A P +   + A            AA  L LF IGGVATL RT+ HGYHS +Q+  GA+ GI S+ A+D + F          +L ++ A    +L+ Y   WP A AG  A++   L+ + + W ++
Sbjct:   70 LPVERPKAVLDIALTTLWFQATYWAADAAKGALGDDRCTSARRATYPNGVSGHFCYFTFVALAVAVYTADRLADVAATPALSTRRPVTTGAAPGSDAAVMAGVPQALLGVVTAAAGLLGLFTIGGVATLVRTYAHGYHSGQQVLLGAAAGIASYLAVDALHFCGATAPHLGVQLAVVAAAGGGALSAYAAAWPSAVAGEEAVTGRQLVGYAAAWLVV 286          
BLAST of Ggra5088.t1 vs. uniprot
Match: A0A5J4YPC0 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YPC0_PORPP)

HSP 1 Score: 109 bits (273), Expect = 3.670e-25
Identity = 71/201 (35.32%), Postives = 100/201 (49.75%), Query Frame = 0
Query:    9 HARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNC-AGRHKEFPNGISGHYCYFIFVAF-----------TASRYARRRLKANPNASPVIKALAAFFLMLFGIGGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKRLTILLANSLTSLTLYYRLWP-HASAGPAISPNHLIFHLSLWTILVIC 196
            H R    F L FA +WFH +Y +L   KA L D NC + R   +PNG+SGHY YF F +            T+ R+ RR+   N   +    AL     M++ +    TLYRT+ HGYHSARQ+  G +  ILSH +L  +L  D        +  IL   +          WP  A+ GPAI    L+  +S+W+I+++C
Sbjct:  131 HRRWAPWFELAFAVLWFHASYWFLYVAKAWLGDVNCNSARAPFYPNGVSGHYAYFGFCSLGLPVFFAAHLQTSQRHERRQ---NEKTNAFFSALYLV-AMVYALTSSITLYRTYAHGYHSARQVLLGVATAILSHVSLLEMLGSDT--VAPLHKCAILALFTACGFMGTRSTWPVEAARGPAIGNVQLLVQVSMWSIVILC 325          
The following BLAST results are available for this feature:
BLAST of Ggra5088.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J6U31.620e-11274.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBL71.230e-8060.39Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2WV892.450e-2835.78Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A1X6PD701.650e-2733.64Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YPC03.670e-2535.32Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..139
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..201
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..150
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 169..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..84
NoneNo IPR availableTMHMMTMhelixcoord: 183..202
NoneNo IPR availableTMHMMTMhelixcoord: 151..168
NoneNo IPR availableTMHMMTMhelixcoord: 55..73
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:430129..430764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1Ggra5088.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 430129..430764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MFLLALLPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCAGRHKE
FPNGISGHYCYFIFVAFTASRYARRRLKANPNASPVIKALAAFFLMLFGI
GGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKR
LTILLANSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVICTYFV
LSEERKVQKEE*
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