Ggra5088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5088.t1
Unique NameGgra5088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:430129..430764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5088Ggra5088Gracilaria gracilis GNS1m malegenetig00000069_pilon 430129..430764 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1.start1Ggra5088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 430129..430131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1.CDS1Ggra5088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 430129..430764 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1.exon1Ggra5088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 430129..430764 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1.stop1Ggra5088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 430762..430764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5088.t1Ggra5088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 430129..430764 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MFLLALLPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCAGRHKE
FPNGISGHYCYFIFVAFTASRYARRRLKANPNASPVIKALAAFFLMLFGI
GGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKR
LTILLANSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVICTYFV
LSEERKVQKEE*
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spliced messenger RNA

>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000069_pilon:430129..430764+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTACTCGCCCTTCTACCACACGCCCGAGCCAAAGCCTTGTTCTC
TCTCACATTCGCATCCGTATGGTTTCACATCACCTATATCTACCTTGCTG
CGTTCAAGGCGCCGTTGGATGACTTCAACTGCGCCGGTCGTCATAAGGAG
TTTCCAAATGGTATATCTGGTCACTATTGCTACTTCATCTTCGTGGCTTT
CACAGCCTCACGATACGCACGTCGTCGCTTGAAAGCGAATCCTAACGCAT
CCCCCGTGATCAAAGCACTGGCCGCGTTTTTCTTGATGCTTTTTGGAATA
GGAGGAGTTGCTACTTTGTATCGCACCTTTTTTCATGGCTATCATTCAGC
ACGTCAAATTTCTTTCGGTGCATCACTTGGTATTCTTTCTCATTGCGCTC
TGGACGTCGTTCTCTTTGAGGACGGAAACGGCTTTGGCACGGATAAGCGT
TTAACCATTTTGCTGGCGAATTCGTTGACAAGTCTTACCTTATACTATCG
ACTTTGGCCACATGCTTCGGCTGGCCCAGCTATTTCGCCCAATCACCTCA
TATTCCATCTTAGTTTATGGACCATCCTCGTAATCTGTACATACTTTGTC
TTGTCGGAAGAGCGCAAAGTTCAAAAGGAAGAATGA
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protein sequence of Ggra5088.t1

>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MFLLALLPHARAKALFSLTFASVWFHITYIYLAAFKAPLDDFNCAGRHKE
FPNGISGHYCYFIFVAFTASRYARRRLKANPNASPVIKALAAFFLMLFGI
GGVATLYRTFFHGYHSARQISFGASLGILSHCALDVVLFEDGNGFGTDKR
LTILLANSLTSLTLYYRLWPHASAGPAISPNHLIFHLSLWTILVICTYFV
LSEERKVQKEE*
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mRNA from alignment at tig00000069_pilon:430129..430764+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000069_pilon:430129..430764+ (Gracilaria gracilis GNS1m male)
ATGTTCCTACTCGCCCTTCTACCACACGCCCGAGCCAAAGCCTTGTTCTC
TCTCACATTCGCATCCGTATGGTTTCACATCACCTATATCTACCTTGCTG
CGTTCAAGGCGCCGTTGGATGACTTCAACTGCGCCGGTCGTCATAAGGAG
TTTCCAAATGGTATATCTGGTCACTATTGCTACTTCATCTTCGTGGCTTT
CACAGCCTCACGATACGCACGTCGTCGCTTGAAAGCGAATCCTAACGCAT
CCCCCGTGATCAAAGCACTGGCCGCGTTTTTCTTGATGCTTTTTGGAATA
GGAGGAGTTGCTACTTTGTATCGCACCTTTTTTCATGGCTATCATTCAGC
ACGTCAAATTTCTTTCGGTGCATCACTTGGTATTCTTTCTCATTGCGCTC
TGGACGTCGTTCTCTTTGAGGACGGAAACGGCTTTGGCACGGATAAGCGT
TTAACCATTTTGCTGGCGAATTCGTTGACAAGTCTTACCTTATACTATCG
ACTTTGGCCACATGCTTCGGCTGGCCCAGCTATTTCGCCCAATCACCTCA
TATTCCATCTTAGTTTATGGACCATCCTCGTAATCTGTACATACTTTGTC
TTGTCGGAAGAGCGCAAAGTTCAAAAGGAAGAATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:430129..430764+

>Ggra5088.t1 ID=Ggra5088.t1|Name=Ggra5088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000069_pilon:430129..430764+ (Gracilaria gracilis GNS1m male)
ATGTTCCTACTCGCCCTTCTACCACACGCCCGAGCCAAAGCCTTGTTCTC
TCTCACATTCGCATCCGTATGGTTTCACATCACCTATATCTACCTTGCTG
CGTTCAAGGCGCCGTTGGATGACTTCAACTGCGCCGGTCGTCATAAGGAG
TTTCCAAATGGTATATCTGGTCACTATTGCTACTTCATCTTCGTGGCTTT
CACAGCCTCACGATACGCACGTCGTCGCTTGAAAGCGAATCCTAACGCAT
CCCCCGTGATCAAAGCACTGGCCGCGTTTTTCTTGATGCTTTTTGGAATA
GGAGGAGTTGCTACTTTGTATCGCACCTTTTTTCATGGCTATCATTCAGC
ACGTCAAATTTCTTTCGGTGCATCACTTGGTATTCTTTCTCATTGCGCTC
TGGACGTCGTTCTCTTTGAGGACGGAAACGGCTTTGGCACGGATAAGCGT
TTAACCATTTTGCTGGCGAATTCGTTGACAAGTCTTACCTTATACTATCG
ACTTTGGCCACATGCTTCGGCTGGCCCAGCTATTTCGCCCAATCACCTCA
TATTCCATCTTAGTTTATGGACCATCCTCGTAATCTGTACATACTTTGTC
TTGTCGGAAGAGCGCAAAGTTCAAAAGGAAGAATGA
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