Ggra5043.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5043.t1
Unique NameGgra5043.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Homology
[Close]
BLAST of Ggra5043.t1 vs. uniprot
Match: A0A2V3J6N8 (MRP-S23 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6N8_9FLOR)

HSP 1 Score: 231 bits (589), Expect = 5.540e-75
Identity = 116/166 (69.88%), Postives = 140/166 (84.34%), Query Frame = 0 
Query:    1 MGRGKPFVKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTKVPELIYPEDRLRSIYLQRNPQTRRMPVNLKAKSIADRHIADRFVSLQVQFMEEQGLSEEKAYEEADRILAEQREEMVEILEDQDMDSTLVNSSIPDAAARAFMASVTDSKRDQKLHQTLLEQE 166
            MGRGKPF KSMK+LV AGV+ KP WMDIV+ATRP F PVT TK PE++YPEDRLRSI+LQRNP   RMP+NLKAKS  +RHI+DRFV+LQ++FM+EQGLSE KAYEEADR+LAEQ+E+M  IL++ D   +LVN  I D AARAFMAS+ DSKRDQKLH+ L+E++
Sbjct:    1 MGRGKPFAKSMKRLVSAGVIRKPAWMDIVEATRPVFSPVTVTKAPEIMYPEDRLRSIFLQRNPDAHRMPINLKAKSKEERHISDRFVALQMKFMDEQGLSENKAYEEADRVLAEQKEQMNRILDEYDTTGSLVNPFIEDEAARAFMASLADSKRDQKLHEALIERK 166
[Close]
BLAST of Ggra5043.t1 vs. uniprot
Match: A0A2P6NKG1 (MRP-S23 domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NKG1_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-11
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0 
Query:    8 VKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTK----VPELIYPEDRLRSIYLQRNPQTRRMPVNL-KAKSIADRHI---ADRFVSLQVQFMEEQGLSEEKAY 105
            +   K  + AGV+ KP+W D+     P   P+ T K    + E+++PEDRLR+IYLQRNP+    P+     +S A+  I   AD FVS Q++F++E+G +E +AY
Sbjct:   10 LSDAKIRLKAGVICKPLWFDVAATLAPKMPPILTRKQRPKLKEIVFPEDRLRNIYLQRNPEGHLYPLRFFPHESTAEYMITSPADVFVSKQIEFIQEKGHTENQAY 115
[Close]
BLAST of Ggra5043.t1 vs. uniprot
Match: A0A7S3AD82 (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AD82_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.470e-7
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 0 
Query:    6 PFVKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTKVPELIYPEDRLRSIYLQRNPQTRRMP----VNLKAKSIADRHIADRFVSLQVQFMEEQGLSEEKAYEEADRILAEQR 116
            P    +  LV  GV+ KP+W D ++A  PP       K   L + EDRLR ++L+RNP     P    ++         H AD FV+ Q+++M + G +EE+AY     +L EQR
Sbjct:   54 PMFTRVTNLVKGGVIPKPLWYDAMRAHMPPLKLQKDAKPMRLEWEEDRLRKVWLKRNPSGTMEPKALFIDPSHPEANHEHPADTFVNQQIKYMRK-GYTEEEAYR---LLLQEQR 164
The following BLAST results are available for this feature:
BLAST of Ggra5043.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J6N85.540e-7569.88MRP-S23 domain-containing protein n=1 Tax=Gracilar... [more]
A0A2P6NKG11.230e-1139.62MRP-S23 domain-containing protein n=1 Tax=Planopro... [more]
A0A7S3AD821.470e-734.78Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 160..180
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..181
IPR023611Ribosomal protein S23/S25, mitochondrialPFAMPF10484MRP-S23coord: 11..115
e-value: 3.8E-10
score: 40.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:326757..327302 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1Ggra5043.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 326757..327302 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MGRGKPFVKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTKVPELIYP
EDRLRSIYLQRNPQTRRMPVNLKAKSIADRHIADRFVSLQVQFMEEQGLS
EEKAYEEADRILAEQREEMVEILEDQDMDSTLVNSSIPDAAARAFMASVT
DSKRDQKLHQTLLEQEAREQEAREHEARENN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023611Ribosomal_S23/S25_mit