Ggra5043.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5043.t1
Unique NameGgra5043.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:326757..327302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087S9K5
Max annot lvl3041|Chlorophyta
Evalue1.75e-05
EggNOG OGs2CPYA@1|root,2R36U@2759|Eukaryota,3846I@33090|Viridiplantae,34NNR@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5043Ggra5043Gracilaria gracilis GNS1m malegenetig00000069_pilon 326757..327302 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1.stop1Ggra5043.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 326757..326759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1.CDS1Ggra5043.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 326757..327302 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1.exon1Ggra5043.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 326757..327302 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1.start1Ggra5043.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 327300..327302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5043.t1Ggra5043.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 326757..327302 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MGRGKPFVKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTKVPELIYP
EDRLRSIYLQRNPQTRRMPVNLKAKSIADRHIADRFVSLQVQFMEEQGLS
EEKAYEEADRILAEQREEMVEILEDQDMDSTLVNSSIPDAAARAFMASVT
DSKRDQKLHQTLLEQEAREQEAREHEARENN*
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spliced messenger RNA

>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000069_pilon:326757..327302- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCGGAAAGCCATTCGTGAAATCGATGAAAAAGCTCGTAGATGC
AGGCGTTGTAGCGAAACCCATCTGGATGGATATTGTGCAAGCAACACGTC
CTCCGTTCGTCCCAGTCACCACCACCAAAGTGCCGGAACTTATTTATCCC
GAAGATCGCCTTCGAAGCATATATCTACAAAGAAATCCTCAAACTCGTCG
AATGCCAGTCAATCTTAAAGCAAAGTCCATTGCCGATCGTCACATTGCAG
ACCGCTTCGTCTCGTTACAAGTTCAGTTTATGGAGGAACAAGGATTGAGT
GAAGAGAAGGCATATGAGGAAGCTGATCGCATTCTCGCGGAACAGAGAGA
AGAGATGGTTGAGATATTAGAAGATCAAGACATGGATAGTACACTCGTGA
ACTCATCCATCCCTGATGCTGCTGCACGGGCTTTCATGGCTTCCGTCACG
GATTCGAAACGCGATCAGAAACTTCATCAAACGCTTCTGGAACAAGAAGC
GAGGGAACAAGAAGCGAGGGAGCATGAAGCGAGGGAAAACAACTAA
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protein sequence of Ggra5043.t1

>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MGRGKPFVKSMKKLVDAGVVAKPIWMDIVQATRPPFVPVTTTKVPELIYP
EDRLRSIYLQRNPQTRRMPVNLKAKSIADRHIADRFVSLQVQFMEEQGLS
EEKAYEEADRILAEQREEMVEILEDQDMDSTLVNSSIPDAAARAFMASVT
DSKRDQKLHQTLLEQEAREQEAREHEARENN*
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mRNA from alignment at tig00000069_pilon:326757..327302-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000069_pilon:326757..327302- (Gracilaria gracilis GNS1m male)
ATGGGCCGCGGAAAGCCATTCGTGAAATCGATGAAAAAGCTCGTAGATGC
AGGCGTTGTAGCGAAACCCATCTGGATGGATATTGTGCAAGCAACACGTC
CTCCGTTCGTCCCAGTCACCACCACCAAAGTGCCGGAACTTATTTATCCC
GAAGATCGCCTTCGAAGCATATATCTACAAAGAAATCCTCAAACTCGTCG
AATGCCAGTCAATCTTAAAGCAAAGTCCATTGCCGATCGTCACATTGCAG
ACCGCTTCGTCTCGTTACAAGTTCAGTTTATGGAGGAACAAGGATTGAGT
GAAGAGAAGGCATATGAGGAAGCTGATCGCATTCTCGCGGAACAGAGAGA
AGAGATGGTTGAGATATTAGAAGATCAAGACATGGATAGTACACTCGTGA
ACTCATCCATCCCTGATGCTGCTGCACGGGCTTTCATGGCTTCCGTCACG
GATTCGAAACGCGATCAGAAACTTCATCAAACGCTTCTGGAACAAGAAGC
GAGGGAACAAGAAGCGAGGGAGCATGAAGCGAGGGAAAACAACTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:326757..327302-

>Ggra5043.t1 ID=Ggra5043.t1|Name=Ggra5043.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000069_pilon:326757..327302- (Gracilaria gracilis GNS1m male)
ATGGGCCGCGGAAAGCCATTCGTGAAATCGATGAAAAAGCTCGTAGATGC
AGGCGTTGTAGCGAAACCCATCTGGATGGATATTGTGCAAGCAACACGTC
CTCCGTTCGTCCCAGTCACCACCACCAAAGTGCCGGAACTTATTTATCCC
GAAGATCGCCTTCGAAGCATATATCTACAAAGAAATCCTCAAACTCGTCG
AATGCCAGTCAATCTTAAAGCAAAGTCCATTGCCGATCGTCACATTGCAG
ACCGCTTCGTCTCGTTACAAGTTCAGTTTATGGAGGAACAAGGATTGAGT
GAAGAGAAGGCATATGAGGAAGCTGATCGCATTCTCGCGGAACAGAGAGA
AGAGATGGTTGAGATATTAGAAGATCAAGACATGGATAGTACACTCGTGA
ACTCATCCATCCCTGATGCTGCTGCACGGGCTTTCATGGCTTCCGTCACG
GATTCGAAACGCGATCAGAAACTTCATCAAACGCTTCTGGAACAAGAAGC
GAGGGAACAAGAAGCGAGGGAGCATGAAGCGAGGGAAAACAACTAA
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