Ggra4920.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4920.t1
Unique NameGgra4920.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Homology
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A2V3IFB2 (Protein LSM12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFB2_9FLOR)

HSP 1 Score: 265 bits (676), Expect = 4.810e-88
Identity = 130/184 (70.65%), Postives = 151/184 (82.07%), Query Frame = 0
Query:    1 MDARPQPGMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQIALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITSGTDANGVKP 184
            MDARPQPGMKFE GK IA+ L DGS LRGFVHAEDKGA LLCLELIPSA++ALVS+VNIKS SP +    +RKWPSNF++DL+KLRA+ERR+ EK E +FNK+GVGV+P AQAIFD L KTMP +WDG+DILILD+VRL  PY  K +S    GD  V+ERVKMILE EAH+I + TDANGVKP
Sbjct:    1 MDARPQPGMKFEVGKPIAIQLNDGSFLRGFVHAEDKGAALLCLELIPSAKVALVSIVNIKSASPLTQIADTRKWPSNFHIDLAKLRAEERRICEKREAEFNKLGVGVSPSAQAIFDTLAKTMPCKWDGEDILILDTVRLAPPYNAKCLS----GDTGVVERVKMILENEAHSIRNATDANGVKP 180          
BLAST of Ggra4920.t1 vs. uniprot
Match: R7QH47 (LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH47_CHOCR)

HSP 1 Score: 169 bits (428), Expect = 1.440e-50
Identity = 82/174 (47.13%), Postives = 113/174 (64.94%), Query Frame = 0
Query:    9 MKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQIALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITSGTDANGV 182
            M FE GK ++V L DG+ L+GFVHAED  AGL+CLELIPSA + L+ + N+KS +P      SRKWP+N ++DL +L+A++ R++ K   +F  IGVGVTP  QA+FDVL KT+P  W+G  I++  +VRL  PY +K+I            RV+M+LER   T     + NGV
Sbjct:    1 MAFEVGKPLSVQLVDGTALKGFVHAEDAAAGLVCLELIPSADLTLLPISNVKSATPIPDLADSRKWPANLDVDLPRLKAEQERIFRKRHIEFTHIGVGVTPEGQAVFDVLAKTLPCEWEGNVIVVFGTVRLGPPYDIKSI------------RVRMVLERRTRTPRPAEETNGV 162          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A2R6P3K0 (AD domain-containing protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P3K0_ACTCC)

HSP 1 Score: 83.6 bits (205), Expect = 7.690e-17
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 0
Query:    1 MDARPQPGMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLE------LIPSAQIALVSLVNIKSTSPYSH---PTHSRKWPSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITS 175
            MDA    G +F  G  +++    G    G +   D+ + +L L+        P   I L+    IK  S       P +S+K      LDLS L+A E     + E +  ++GVGVTP AQ+IFD L KT+P RWD   I++++ VR+++PY  ++++    G     ERV+ +LE E   + S
Sbjct:    1 MDANSFGGEEFAVGCILSIKTTLGDEFDGQIITFDRPSNILVLQEGIKSVSGPRRNIRLLKANYIKEFSYLGQAEDPLNSKKC----YLDLSALQAREESAIRQAEIEAERLGVGVTPVAQSIFDALSKTLPVRWDKTAIVVMNEVRVSSPYLPESVAG---GTPAANERVRKVLELERKRLQS 177          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A0D9VKW1 (AD domain-containing protein n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VKW1_9ORYZ)

HSP 1 Score: 79.7 bits (195), Expect = 2.920e-15
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0
Query:   75 PSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITSGTDANGV 182
            P+   LDLS + A E     + E    +IGVGVTP AQ+IFD L KT+P +WD  DI+++  VR+  PY  + +S    G +   ERVK ++++  HTI  G  + G+
Sbjct:   91 PAGCVLDLSAIHAREEAALRQAEIDAERIGVGVTPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVCNPYLPENVSG---GTSAANERVKKVVKKP-HTICCGVQSVGL 194          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A7C8YUS8 (AD domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YUS8_OPUST)

HSP 1 Score: 78.6 bits (192), Expect = 7.700e-15
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0
Query:   77 NFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITS 175
            N  +DL+ LRA E     + E +  +IGVGVTP AQ+IFD L KT+P RWD   I+++D VR+ +PY  ++++    G     ERV+ +LE E   + S
Sbjct:   93 NCYVDLNSLRAREESAIRQAEIEAERIGVGVTPEAQSIFDALSKTLPVRWDKTAIVVMDEVRVCSPYLPESVTG---GTPAANERVRKVLEFERKRLHS 188          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A3L6QCJ5 (AD domain-containing protein n=6 Tax=Panicoideae TaxID=147369 RepID=A0A3L6QCJ5_PANMI)

HSP 1 Score: 77.8 bits (190), Expect = 1.910e-14
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 0
Query:   75 PSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILERE 169
            P+   LDL  + A E     + E +  +IGVGVTP AQ+IFD L KT+P +WD  DI+++  VR+ +PY  + +S    G A   ERVK +++ E
Sbjct:  100 PAGCTLDLDAIYAREEAALRQAEIEAERIGVGVTPEAQSIFDALSKTLPVQWDKTDIIVMKEVRVRSPYMPENVSG---GTAAANERVKKVIDFE 191          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A1D6QER0 (RNA-processing Lsm domain n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6QER0_MAIZE)

HSP 1 Score: 76.3 bits (186), Expect = 2.580e-14
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 0
Query:   75 PSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITS 175
            P++  LDL+ + A E     + E +  +IGVGVTP AQ+IFD L KT+P +WD  DI+++  VR+ +PY  + ++    G A   ERVK +++ E   + S
Sbjct:   50 PASCMLDLNSIYAREDAALRQAEIEAERIGVGVTPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVRSPYLPENVNG---GTAAANERVKKVIDFERKRLHS 147          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A4D9C8I4 (AD domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9C8I4_SALSN)

HSP 1 Score: 75.9 bits (185), Expect = 3.530e-14
Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 0
Query:   20 HLKDGSLLRGFVHAEDKGAGLLCLELIPSAQIALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITS 175
            +LK  SL          GAG       P   I L+    IK  +   H          F LDL+ L++ E     + E +  +IGVGVTP AQ++FD L KT+P RWD   I++++ VR+++PY  ++++    G     ERV+ ++E E   + S
Sbjct:    4 YLKKSSLTLKSQEESKSGAG-------PKRNIRLLKANYIKEFAFLGHAEDPLDANKCF-LDLNTLQSKEESAIRQAEAEAERIGVGVTPQAQSLFDALFKTLPVRWDKSTIVVMNEVRVSSPYLPESVTG---GTPAANERVRKVVEFEKKRLQS 148          
BLAST of Ggra4920.t1 vs. uniprot
Match: A0A1D6HJY5 (Rho-related protein from plants 1 n=6 Tax=Poaceae TaxID=4479 RepID=A0A1D6HJY5_MAIZE)

HSP 1 Score: 79.0 bits (193), Expect = 7.460e-14
Identity = 55/191 (28.80%), Postives = 89/191 (46.60%), Query Frame = 0
Query:    8 GMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQIALVSLVNIKSTSPYSHPTHSRKW-----------------------PSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILEREAHTITS 175
            G +F  G  ++     G    G + A D+ + LL + ++P + + LV+ ++I         +  R+                        P+   LDL+ + A E     + E +  KIGVGVTP AQ IFD L KT+P +WD  DI+++  VR+ +PY  + +S    G A   ERVK +++ E   + S
Sbjct:  313 GEEFAIGVVLSAKTTLGEEFEGQIVAFDRPSNLLVIHILPKS-LMLVTRISISQEGVGRAESGERRNVRVLKANYIREFSVLSKGDDPLDPAGCMLDLNSIYAREDAALRQAEIEAEKIGVGVTPEAQNIFDALSKTLPVQWDKTDIVVMKEVRVRSPYLPENVSG---GTAAANERVKKVIDFERKRLHS 499          
BLAST of Ggra4920.t1 vs. uniprot
Match: K3YZ15 (AD domain-containing protein n=14 Tax=PACMAD clade TaxID=147370 RepID=K3YZ15_SETIT)

HSP 1 Score: 76.3 bits (186), Expect = 7.970e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   75 PSNFNLDLSKLRADERRMYEKHERQFNKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISSERSGDAKVMERVKMILERE 169
            P    LDL  + A E     + E +  +IGVGVTP AQ+IFD L KT+P +WD  DI+++  VR+ +PY  + +S    G A   ERVK +++ E
Sbjct:  105 PPGCMLDLDAIYAREEAALRQAEIEAERIGVGVTPEAQSIFDALSKTLPVQWDKTDIIVMKEVRVRSPYLPENVSG---GTAAANERVKKVIDFE 196          
The following BLAST results are available for this feature:
BLAST of Ggra4920.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFB24.810e-8870.65Protein LSM12-like n=1 Tax=Gracilariopsis chorda T... [more]
R7QH471.440e-5047.13LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 ... [more]
A0A2R6P3K07.690e-1732.07AD domain-containing protein n=4 Tax=Actinidia Tax... [more]
A0A0D9VKW12.920e-1539.81AD domain-containing protein n=2 Tax=Leersia perri... [more]
A0A7C8YUS87.700e-1541.41AD domain-containing protein n=1 Tax=Opuntia strep... [more]
A0A3L6QCJ51.910e-1441.05AD domain-containing protein n=6 Tax=Panicoideae T... [more]
A0A1D6QER02.580e-1438.61RNA-processing Lsm domain n=1 Tax=Zea mays TaxID=4... [more]
A0A4D9C8I43.530e-1432.05AD domain-containing protein n=1 Tax=Salvia splend... [more]
A0A1D6HJY57.460e-1428.80Rho-related protein from plants 1 n=6 Tax=Poaceae ... [more]
K3YZ157.970e-1441.05AD domain-containing protein n=14 Tax=PACMAD clade... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 76..165
e-value: 3.9E-20
score: 82.9
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 79..165
e-value: 8.4E-21
score: 73.9
IPR039683Protein Lsm12-likePANTHERPTHR13542LSM12 HOMOLOGcoord: 6..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:120355..121122 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1Ggra4920.t1Gracilaria gracilis GNS1m malemRNAtig00000157_pilon 120355..121122 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MDARPQPGMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQ
IALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQF
NKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISS
ERSGDAKVMERVKMILEREAHTITSGTDANGVKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
IPR039683Lsm12-like