Ggra4920.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4920.t1
Unique NameGgra4920.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:120355..121122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651382.1
PFAMsAD
Max annot lvl3041|Chlorophyta
Evalue1.92e-20
EggNOG OGsKOG4401@1|root,KOG4401@2759|Eukaryota,37IMV@33090|Viridiplantae,34N0V@3041|Chlorophyta
DescriptionAnticodon-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4920Ggra4920Gracilaria gracilis GNS1m malegenetig00000157_pilon 120355..121122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1Ggra4920.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 120355..121122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1.start1Ggra4920.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 120355..120357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1.CDS1Ggra4920.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 120355..120586 +
Ggra4920.t1.CDS2Ggra4920.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000157_pilon 120690..120903 +
Ggra4920.t1.CDS3Ggra4920.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000157_pilon 121014..121122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1.exon1Ggra4920.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 120355..120586 +
Ggra4920.t1.exon2Ggra4920.t1.exon2Gracilaria gracilis GNS1m maleexontig00000157_pilon 120690..120903 +
Ggra4920.t1.exon3Ggra4920.t1.exon3Gracilaria gracilis GNS1m maleexontig00000157_pilon 121014..121122 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1.intron1Ggra4920.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000157_pilon 120587..120689 +
Ggra4920.t1.intron2Ggra4920.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000157_pilon 120904..121013 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4920.t1.stop1Ggra4920.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 121120..121122 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MDARPQPGMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQ
IALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQF
NKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISS
ERSGDAKVMERVKMILEREAHTITSGTDANGVKP*
back to top

spliced messenger RNA

>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000157_pilon:120355..121122+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCGTCCTCAGCCGGGCATGAAGTTCGAGACCGGCAAGTCGAT
CGCCGTTCATCTCAAGGATGGCAGCTTGTTGCGCGGCTTCGTGCATGCTG
AGGATAAGGGCGCGGGCTTGTTGTGTCTCGAGCTCATTCCGTCCGCCCAA
ATAGCGCTTGTTTCGCTTGTTAACATCAAGTCCACGTCGCCGTATTCTCA
CCCCACACACTCTAGAAAGTGGCCGTCAAACTTCAACCTCGACCTTTCCA
AGCTGCGAGCAGATGAACGTCGTATGTACGAGAAGCACGAGCGCCAGTTC
AACAAAATTGGCGTAGGAGTCACGCCGTTTGCGCAAGCCATCTTCGACGT
TCTCGATAAGACTATGCCCAGCAGATGGGACGGTAAGGACATCCTAATTC
TGGACTCCGTTCGCCTCACTGCACCATACACGGTCAAAACAATTAGTTCG
GAACGCAGCGGCGATGCCAAAGTCATGGAGCGAGTCAAGATGATTCTAGA
GCGAGAAGCGCATACAATAACAAGTGGCACAGATGCGAATGGTGTGAAAC
CATAA
back to top

protein sequence of Ggra4920.t1

>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MDARPQPGMKFETGKSIAVHLKDGSLLRGFVHAEDKGAGLLCLELIPSAQ
IALVSLVNIKSTSPYSHPTHSRKWPSNFNLDLSKLRADERRMYEKHERQF
NKIGVGVTPFAQAIFDVLDKTMPSRWDGKDILILDSVRLTAPYTVKTISS
ERSGDAKVMERVKMILEREAHTITSGTDANGVKP*
back to top

mRNA from alignment at tig00000157_pilon:120355..121122+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000157_pilon:120355..121122+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCGTCCTCAGCCGGGCATGAAGTTCGAGACCGGCAAGTCGAT
CGCCGTTCATCTCAAGGATGGCAGCTTGTTGCGCGGCTTCGTGCATGCTG
AGGATAAGGGCGCGGGCTTGTTGTGTCTCGAGCTCATTCCGTCCGCCCAA
ATAGCGCTTGTTTCGCTTGTTAACATCAAGTCCACGTCGCCGTATTCTCA
CCCCACACACTCTAGAAAGTGGCCGTCAAACTGTGCGTACACCCGTCTCG
CGTCGAAGCAACCGCGTGTTCACCCCTCGCGCCCCCTATCAGCCTGCTAA
CCGTTTGCCCCTCCTTTTGCTTTTCACGCGTGCAGTCAACCTCGACCTTT
CCAAGCTGCGAGCAGATGAACGTCGTATGTACGAGAAGCACGAGCGCCAG
TTCAACAAAATTGGCGTAGGAGTCACGCCGTTTGCGCAAGCCATCTTCGA
CGTTCTCGATAAGACTATGCCCAGCAGATGGGACGGTAAGGACATCCTAA
TTCTGGACTCCGTTCGCCTCACTGCACCATACACGGTCAAAACAATTAGG
TACGTCGTCGCTCGCTTTCTTTCACTCTTGCTACCAGTTCACATGCTTGC
ACTAACATGTCGCCACCCCTCCCCCATCTCTGCGTTGTGCCATCTGTTCG
ACACTCCAGTTCGGAACGCAGCGGCGATGCCAAAGTCATGGAGCGAGTCA
AGATGATTCTAGAGCGAGAAGCGCATACAATAACAAGTGGCACAGATGCG
AATGGTGTGAAACCATAA
back to top

Coding sequence (CDS) from alignment at tig00000157_pilon:120355..121122+

>Ggra4920.t1 ID=Ggra4920.t1|Name=Ggra4920.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000157_pilon:120355..121122+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCGTCCTCAGCCGGGCATGAAGTTCGAGACCGGCAAGTCGAT
CGCCGTTCATCTCAAGGATGGCAGCTTGTTGCGCGGCTTCGTGCATGCTG
AGGATAAGGGCGCGGGCTTGTTGTGTCTCGAGCTCATTCCGTCCGCCCAA
ATAGCGCTTGTTTCGCTTGTTAACATCAAGTCCACGTCGCCGTATTCTCA
CCCCACACACTCTAGAAAGTGGCCGTCAAACTTCAACCTCGACCTTTCCA
AGCTGCGAGCAGATGAACGTCGTATGTACGAGAAGCACGAGCGCCAGTTC
AACAAAATTGGCGTAGGAGTCACGCCGTTTGCGCAAGCCATCTTCGACGT
TCTCGATAAGACTATGCCCAGCAGATGGGACGGTAAGGACATCCTAATTC
TGGACTCCGTTCGCCTCACTGCACCATACACGGTCAAAACAATTAGTTCG
GAACGCAGCGGCGATGCCAAAGTCATGGAGCGAGTCAAGATGATTCTAGA
GCGAGAAGCGCATACAATAACAAGTGGCACAGATGCGAATGGTGTGAAAC
CATAA
back to top