Ggra4886.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4886.t1
Unique NameGgra4886.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Homology
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A2V3J4Z2 (Calvin cycle protein CP12, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Z2_9FLOR)

HSP 1 Score: 149 bits (375), Expect = 2.890e-44
Identity = 81/117 (69.23%), Postives = 96/117 (82.05%), Query Frame = 0
Query:    1 MAFVSSLSLPARARVPVAAKCSAFRGAACVRVAPARRACVLMNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            MAFV+S+S+ +RA V    KCS+FRG    RVA   R  +LMNL+TIQ KIQEEIKKAE AT++FG++SKEAALAWD+VEELEAEASHMK  KG  DPL+EYCED+P+ADECRVYDN
Sbjct:    1 MAFVNSVSVASRAPVFSPLKCSSFRGVQ-FRVASTPRPALLMNLDTIQTKIQEEIKKAEAATAQFGKSSKEAALAWDIVEELEAEASHMKAKKGTPDPLEEYCEDAPDADECRVYDN 116          
BLAST of Ggra4886.t1 vs. uniprot
Match: R7Q2J1 (CP12 protein, chloroplast, involves in the regulation of CO2 assimilation (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2J1_CHOCR)

HSP 1 Score: 130 bits (327), Expect = 8.890e-37
Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 0
Query:    1 MAFVSSLSLPARARVPVAAKCSAFRGAACVRVAPARRACVLMNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            MAFVSS+S+  R    V    S+F+G++     P  R  + MNL+TIQVKIQEE+KKA++AT +FG+ SKEAALAWDVVEELEAEASH+K  KG  DPL+++CE+SPEADECRVY++
Sbjct:   15 MAFVSSVSVAVRP-ASVTPAVSSFKGSSLRWTTPKPRVALSMNLDTIQVKIQEEMKKAQDATQQFGKGSKEAALAWDVVEELEAEASHLKANKGSNDPLEKFCEESPEADECRVYED 130          
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A5J4YIM3 (Calvin cycle protein CP12, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIM3_PORPP)

HSP 1 Score: 104 bits (260), Expect = 3.440e-27
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   49 VKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            VKI + IK AEEATSKFG+ SKEAA+AWD VEELEAEASH K +  K DPL+EYC+D+PEADECR YDN
Sbjct:   15 VKISDAIKGAEEATSKFGKGSKEAAVAWDTVEELEAEASHQKASNAKKDPLEEYCDDAPEADECRTYDN 83          
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A1X6NM38 (CP12 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM38_PORUM)

HSP 1 Score: 102 bits (254), Expect = 7.180e-26
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 0
Query:    3 FVSSLSLPARARVPVAAKC--SAFRGAACVRVAPARRACVLMNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            FVS ++  + AR   +A C  S+F GAA V  AP  RA   M +  IQ  IQ EI KA+EA+ KFG+ SKEAA AWD VEELEAEASH K A+ K DPL+ YCED PEADECR Y++
Sbjct:    4 FVSGVAAVSSARRAPSAVCTRSSFAGAAVVA-APVVRA--TMRMSNIQETIQTEIAKAKEASDKFGKTSKEAAAAWDAVEELEAEASHQKNAEKK-DPLEAYCEDVPEADECRTYED 116          
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A7S1TPK3 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TPK3_9RHOD)

HSP 1 Score: 97.8 bits (242), Expect = 3.890e-24
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0
Query:   35 ARRACVLMNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            ARR  ++ +L   Q KI   +K+AEEAT  +G+ SKEAA+AWD VEELEAEASH K A+ K DPL+ YCED+PEADECR YDN
Sbjct:   30 ARRVVMMSDL---QGKINAAMKEAEEATKTYGKTSKEAAVAWDTVEELEAEASHQKSAEVKKDPLEAYCEDAPEADECRTYDN 109          
BLAST of Ggra4886.t1 vs. uniprot
Match: Q2PC90 (Small chloroplast protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q2PC90_GALSU)

HSP 1 Score: 97.8 bits (242), Expect = 6.790e-24
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 0
Query:   51 IQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            IQE IKKAEEAT KFGR+SKEAA AWD VEEL+AEASH +V + K DPL+ +C++SPEA+ECRVYDN
Sbjct:   64 IQESIKKAEEATKKFGRDSKEAAAAWDAVEELDAEASHQRVRQ-KTDPLETFCDESPEAEECRVYDN 129          
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A7J7IC32 (CP12 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IC32_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 4.680e-20
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0
Query:   42 MNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            M  E++  +I E IK AE+A  K+G+ SKEA +AWDVVEELEAE SH    +   DPL++YC++ PEADECRVY++
Sbjct:   46 MASESMNTRIDEAIKNAEDAARKYGKGSKEAKVAWDVVEELEAERSHQAAQRQSEDPLEQYCKEVPEADECRVYED 121          
BLAST of Ggra4886.t1 vs. uniprot
Match: M1V6V0 (CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V6V0_CYAM1)

HSP 1 Score: 87.4 bits (215), Expect = 6.810e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0
Query:   36 RRACVLMNLETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            R A + M  E +  +IQE IK AE+A  K+G+ SKEA +AWD VEELEAE SH    K   DPL++YC + PEADECRVY++
Sbjct:   41 RVAALRMANEKLNTQIQEAIKNAEDAAKKYGKASKEAKVAWDFVEELEAERSHQAANKQSEDPLEKYCNEVPEADECRVYED 122          
BLAST of Ggra4886.t1 vs. uniprot
Match: A0A7S0ZJ74 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ74_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 3.580e-18
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 0
Query:   31 RVAPARRACVLMNLET-IQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEA 109
            R A A+R  VLM     +Q +I+  + +AE A++KFG++SKEAA AWD VEELEAEASH K +  K DPL+EYCEDSPEA
Sbjct:   35 RAAVAKRGSVLMMAAPDLQERIKAAMAEAEAASAKFGKSSKEAANAWDTVEELEAEASHQKASTVKKDPLEEYCEDSPEA 114          
BLAST of Ggra4886.t1 vs. uniprot
Match: B4WRK8 (CP12 domain-containing protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WRK8_SYNS7)

HSP 1 Score: 80.9 bits (198), Expect = 7.000e-18
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   44 LETIQVKIQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLDEYCEDSPEADECRVYDN 117
            +  IQ KI+ EI+ A EA S    +++  A AWD VEEL+AEASH +  K +  P D+YC+D+PEADECRVYDN
Sbjct:    1 MSDIQEKIKTEIEAAREACSADNNDAEGCAAAWDAVEELQAEASHQRTKKPEKSPFDQYCDDNPEADECRVYDN 74          
The following BLAST results are available for this feature:
BLAST of Ggra4886.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4Z22.890e-4469.23Calvin cycle protein CP12, chloroplastic n=1 Tax=G... [more]
R7Q2J18.890e-3760.68CP12 protein, chloroplast, involves in the regulat... [more]
A0A5J4YIM33.440e-2773.91Calvin cycle protein CP12, chloroplastic n=1 Tax=P... [more]
A0A1X6NM387.180e-2657.26CP12 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S1TPK33.890e-2462.65Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
Q2PC906.790e-2473.13Small chloroplast protein n=1 Tax=Galdieria sulphu... [more]
A0A7J7IC324.680e-2055.26CP12 domain-containing protein n=1 Tax=Cyanidiococ... [more]
M1V6V06.810e-2054.88CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon ... [more]
A0A7S0ZJ743.580e-1858.75Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
B4WRK87.000e-1854.05CP12 domain-containing protein n=2 Tax=Cyanobacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..64
NoneNo IPR availablePFAMPF02672CP12coord: 47..116
e-value: 1.2E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR33921:SF15CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 42..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13
IPR003823CP12 domainSMARTSM01093CP12_2coord: 47..117
e-value: 4.6E-24
score: 96.0
IPR039314Calvin cycle protein CP12-likePANTHERPTHR33921CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 42..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:492199..492648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1Ggra4886.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 492199..492648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MAFVSSLSLPARARVPVAAKCSAFRGAACVRVAPARRACVLMNLETIQVK
IQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLD
EYCEDSPEADECRVYDN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003823CP12_dom
IPR039314CP12-like