Ggra4886.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4886.t1
Unique NameGgra4886.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:492199..492648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706707.1
PFAMsCP12
Max annot lvl2759|Eukaryota
Evalue1.67e-24
EggNOG OGs2DAQB@1|root,2SCXW@2759|Eukaryota
DescriptionCP12
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4886Ggra4886Gracilaria gracilis GNS1m malegenetig00000090_pilon 492199..492648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1Ggra4886.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 492199..492648 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1.stop1Ggra4886.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 492199..492201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1.CDS1Ggra4886.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 492199..492492 -
Ggra4886.t1.CDS2Ggra4886.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 492589..492648 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1.exon1Ggra4886.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 492199..492492 -
Ggra4886.t1.exon2Ggra4886.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 492589..492648 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1.intron1Ggra4886.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 492493..492588 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4886.t1.start1Ggra4886.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 492646..492648 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MAFVSSLSLPARARVPVAAKCSAFRGAACVRVAPARRACVLMNLETIQVK
IQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLD
EYCEDSPEADECRVYDN*
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spliced messenger RNA

>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000090_pilon:492199..492648- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTGTCGTCGCTCTCGCTGCCCGCGCGCGCGCGCGTGCCCGT
CGCTGCAAAGTGCTCTGCGTTCCGCGGTGCTGCGTGCGTGCGCGTTGCGC
CTGCGCGTCGCGCGTGCGTGCTCATGAACCTGGAAACCATCCAGGTGAAG
ATCCAGGAGGAGATCAAGAAGGCCGAGGAGGCTACGTCAAAGTTTGGCCG
CAACTCCAAGGAGGCCGCGCTGGCCTGGGACGTGGTGGAGGAGCTGGAGG
CAGAGGCCTCCCACATGAAGGTGGCCAAGGGCAAGGTCGACCCGCTGGAC
GAGTACTGCGAGGACTCGCCAGAGGCTGACGAGTGTCGCGTCTACGACAA
TTAG
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protein sequence of Ggra4886.t1

>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MAFVSSLSLPARARVPVAAKCSAFRGAACVRVAPARRACVLMNLETIQVK
IQEEIKKAEEATSKFGRNSKEAALAWDVVEELEAEASHMKVAKGKVDPLD
EYCEDSPEADECRVYDN*
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mRNA from alignment at tig00000090_pilon:492199..492648-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000090_pilon:492199..492648- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTGTCGTCGCTCTCGCTGCCCGCGCGCGCGCGCGTGCCCGT
CGCTGCAAAGGTAAGCGCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
TCGCCGCCGCCGCGTACTGACTGACTGACTCCCCCGTGCCGCTCCCCCCC
CCCCAGTGCTCTGCGTTCCGCGGTGCTGCGTGCGTGCGCGTTGCGCCTGC
GCGTCGCGCGTGCGTGCTCATGAACCTGGAAACCATCCAGGTGAAGATCC
AGGAGGAGATCAAGAAGGCCGAGGAGGCTACGTCAAAGTTTGGCCGCAAC
TCCAAGGAGGCCGCGCTGGCCTGGGACGTGGTGGAGGAGCTGGAGGCAGA
GGCCTCCCACATGAAGGTGGCCAAGGGCAAGGTCGACCCGCTGGACGAGT
ACTGCGAGGACTCGCCAGAGGCTGACGAGTGTCGCGTCTACGACAATTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:492199..492648-

>Ggra4886.t1 ID=Ggra4886.t1|Name=Ggra4886.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000090_pilon:492199..492648- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTGTCGTCGCTCTCGCTGCCCGCGCGCGCGCGCGTGCCCGT
CGCTGCAAAGTGCTCTGCGTTCCGCGGTGCTGCGTGCGTGCGCGTTGCGC
CTGCGCGTCGCGCGTGCGTGCTCATGAACCTGGAAACCATCCAGGTGAAG
ATCCAGGAGGAGATCAAGAAGGCCGAGGAGGCTACGTCAAAGTTTGGCCG
CAACTCCAAGGAGGCCGCGCTGGCCTGGGACGTGGTGGAGGAGCTGGAGG
CAGAGGCCTCCCACATGAAGGTGGCCAAGGGCAAGGTCGACCCGCTGGAC
GAGTACTGCGAGGACTCGCCAGAGGCTGACGAGTGTCGCGTCTACGACAA
TTAG
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