Ggra4860.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4860.t1
Unique NameGgra4860.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Homology
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A2V3J6P7 (Nuclear nucleic acid-binding protein C1D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6P7_9FLOR)

HSP 1 Score: 244 bits (623), Expect = 9.750e-76
Identity = 130/170 (76.47%), Postives = 145/170 (85.29%), Query Frame = 0
Query:    1 MERSHQQAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEAGESTEHKQQPKRDRRKHIANARKSAAMLAALVFPEEEDLLRALQGKPGRLENEGEGNMASRILYKTFNEN 170
            MERSHQQA+L  TKFS+A+EQLQRALRP+LSAID LRS+ NEEELD +SR RMHISLAYAVNSLFCMYLRTQGIDPATHP+AEEI RVQDAF+RMRKVEAGEST HKQ PKRDRRKHIAN++KSAA LAALVFPEE+DLLRALQGK  R E E   +    I++    +N
Sbjct:    1 MERSHQQAQLALTKFSYAVEQLQRALRPVLSAIDGLRSSSNEEELDAISRTRMHISLAYAVNSLFCMYLRTQGIDPATHPIAEEIVRVQDAFMRMRKVEAGESTSHKQLPKRDRRKHIANSKKSAARLAALVFPEEDDLLRALQGKTRRPELEEAESTPQSIIHDDAKQN 170          
BLAST of Ggra4860.t1 vs. uniprot
Match: uncharacterized protein LOC123543406 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6310 (uncharacterized protein LOC123543406 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6310)

HSP 1 Score: 100 bits (250), Expect = 6.350e-22
Identity = 61/158 (38.61%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    1 MERSHQQAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEAGESTEHKQQPKRDRRKHIANARKSAAMLAALVFPEEEDLLRALQGKPGRLENEGEGNM 158
            ME    Q +     F   L+ L+ A R +LSA+D LR+ G E+++ P+ RAR+  +LAYA+++LFCMYLRTQG DP+THPV EEI RV+ A++R+ +V +G+         R R++  A  + + + L+ L+   E  L  A+ G     E+ G+ N+
Sbjct:    1 MEAEQAQVQAALDIFGEKLDALEAATRQVLSALDELRANGGEDDVPPLVRARVDATLAYALSALFCMYLRTQGQDPSTHPVREEIGRVRAAYMRIHEVASGDKG-------RPRKRAHAPLQSAESQLSKLLTDGERALHHAVNG--ATKESTGKSNV 149          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A7S1T4K4 (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K4_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 9.740e-11
Identity = 32/84 (38.10%), Postives = 57/84 (67.86%), Query Frame = 0
Query:   15 FSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKV 98
            F +A+  +++ L+P+L    +  + G + +   +  A +H++LAY +NSLF M+LRTQG+D + HPV EEI RV+ A+ ++++V
Sbjct:   12 FENAIRAIEQGLQPVLEEASVGSADGGDVDTR-LREAEVHVALAYTLNSLFYMFLRTQGVDASQHPVREEIDRVKIAYAKLQRV 94          
BLAST of Ggra4860.t1 vs. uniprot
Match: uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFED7CF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFED7CF)

HSP 1 Score: 67.4 bits (163), Expect = 6.100e-10
Identity = 32/82 (39.02%), Postives = 58/82 (70.73%), Query Frame = 0
Query:   15 FSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMR 96
            F+ +L+Q++  ++P+L      +++    +LDP SRA++++  AY VN+LF +YL+TQGI+P  HP+ +EIAR+Q  F +++
Sbjct:   18 FNRSLKQVESMVQPLLEQPLTTKTS----KLDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 95          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A6A5BJN0 (Nuclear nucleic acid-binding protein C1D n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BJN0_NAEFO)

HSP 1 Score: 67.4 bits (163), Expect = 7.420e-10
Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 0
Query:   15 FSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMR 96
            F+ +L+Q++  ++P+L             +LDP SRA++++  AY VN+LF +YL+TQGI+P  HP+ +EIAR+Q  F +++
Sbjct:   17 FNRSLKQVESLVQPLLEQ----PLTSKTSKLDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 94          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A151ZD21 (Nuclear nucleic acid-binding protein C1D n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD21_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 8.730e-10
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    7 QAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEAGESTEHKQQPK 111
            Q +   + F   L++L+  L P       +    + E+L P   +++++++AYA+N+LF MYL+TQGI P  HPV  E+ R++  F+++R + + +STE +++PK
Sbjct:    9 QIQQDISNFESILDKLETQLEPFFR----IPLKEHLEKLSPNDSSKLNVTVAYALNALFFMYLQTQGISPHEHPVKSELERIKPYFLKLRNL-SNKSTEEEEKPK 108          
BLAST of Ggra4860.t1 vs. uniprot
Match: nuclear nucleic acid-binding protein C1D-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0001869040 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0001869040)

HSP 1 Score: 64.7 bits (156), Expect = 4.120e-9
Identity = 29/85 (34.12%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   15 FSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVE 99
            FS +L+ ++   +P L       +  + E+L+ + +A++H++  YA+NSLF +YL TQGIDP  HP+  E+ R++    R++++E
Sbjct:   19 FSDSLKSVEEVFKPFLQM-----ALEDVEKLESLDQAKLHLTAVYAINSLFWIYLTTQGIDPKDHPIKNELDRIRSYMNRVKEIE 98          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A7S0IES0 (Nuclear nucleic acid-binding protein C1D n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IES0_MICPS)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-9
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:   11 QYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARV 88
            Q  KF  A+++++  L P+LSA         E  L+P+ RAR+HI+LA AV++L+ MY++T G+DPA H ++ E+ RV
Sbjct:   47 QLEKFEAAVQEMEDGLTPLLSA----DRKEMEAALNPLERARVHIALANAVSTLYAMYIKTVGMDPADHGISRELERV 120          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A0J0XBD7 (Exosome complex protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XBD7_9TREE)

HSP 1 Score: 65.9 bits (159), Expect = 5.960e-9
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   15 FSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEAG 101
            FS +L+ L+ AL P+L+       A   + L  + RA++ + +AY +N+L  MYL+T+GIDP TH VA E+ RV+  + ++R  EAG
Sbjct:   12 FSVSLDTLESALAPLLAR----PLAETRDALGTIERAKLDVLIAYTINNLVWMYLKTRGIDPDTHGVAPELERVKTYYAKVRDAEAG 94          
BLAST of Ggra4860.t1 vs. uniprot
Match: A0A0L0DEP2 (Nuclear nucleic acid-binding protein C1D n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEP2_THETB)

HSP 1 Score: 63.5 bits (153), Expect = 1.730e-8
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 0
Query:   16 SHALEQLQRALRPMLSAIDLLRSAGNEE---ELDPMSRARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARV 88
            S AL+++  AL  + + +  L     EE    LD   +A+++++LAY++NSLF +YL+TQG DP+ HPVA+E+ARV
Sbjct:    8 SRALDEVDAALAQVEATMQPLLEKPLEEVMENLDNADKAKLNVALAYSLNSLFHIYLKTQGQDPSAHPVADELARV 83          
The following BLAST results are available for this feature:
BLAST of Ggra4860.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6P79.750e-7676.47Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
uncharacterized protein LOC123543406 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D63106.350e-2238.61uncharacterized protein LOC123543406 n=1 Tax=Merce... [more]
A0A7S1T4K49.740e-1138.10Nuclear nucleic acid-binding protein C1D (Fragment... [more]
uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFED7CF6.100e-1039.02uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BJN07.420e-1039.02Nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
A0A151ZD218.730e-1033.33Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]
nuclear nucleic acid-binding protein C1D-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00018690404.120e-934.12nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A7S0IES04.230e-942.31Nuclear nucleic acid-binding protein C1D n=2 Tax=M... [more]
A0A0J0XBD75.960e-940.23Exosome complex protein n=1 Tax=Cutaneotrichosporo... [more]
A0A0L0DEP21.730e-843.42Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..277
NoneNo IPR availableCOILSCoilCoilcoord: 292..312
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..235
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 11..298
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 15..91
e-value: 4.2E-11
score: 43.3
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 11..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:313454..314398 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1Ggra4860.t1Gracilaria gracilis GNS1m malemRNAtig00000090_pilon 313454..314398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MERSHQQAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEA
GESTEHKQQPKRDRRKHIANARKSAAMLAALVFPEEEDLLRALQGKPGRL
ENEGEGNMASRILYKTFNENKVTTTTEPKQSEEDRTGEKENDNREEGIEI
DSDSEHEGSSNLQAQGEKAVAGDEEQSEHKTPATGENKKKKSKKGKKDKK
RSKEKRKKAKAEEVEDKQKELNKGEDKEKVKSKKRKSKSGPSSSDKREKK
RKKRNMEKLEQRKE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair