Ggra4860.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4860.t1
Unique NameGgra4860.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:313454..314398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002499847.1
PFAMsSas10_Utp3
Max annot lvl33090|Viridiplantae
KEGG koko:K12592
KEGG Pathwayko03018,map03018
Evalue5.08e-10
EggNOG OGsKOG4835@1|root,KOG4835@2759|Eukaryota,37TYX@33090|Viridiplantae
DescriptionNuclear nucleic acid-binding protein
COG categoryL
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4860Ggra4860Gracilaria gracilis GNS1m malegenetig00000090_pilon 313454..314398 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1.start1Ggra4860.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 313454..313456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1.CDS1Ggra4860.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 313454..314398 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1.exon1Ggra4860.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 313454..314398 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1.stop1Ggra4860.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 314396..314398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4860.t1Ggra4860.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 313454..314398 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MERSHQQAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEA
GESTEHKQQPKRDRRKHIANARKSAAMLAALVFPEEEDLLRALQGKPGRL
ENEGEGNMASRILYKTFNENKVTTTTEPKQSEEDRTGEKENDNREEGIEI
DSDSEHEGSSNLQAQGEKAVAGDEEQSEHKTPATGENKKKKSKKGKKDKK
RSKEKRKKAKAEEVEDKQKELNKGEDKEKVKSKKRKSKSGPSSSDKREKK
RKKRNMEKLEQRKE*
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spliced messenger RNA

>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000090_pilon:313454..314398+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCTCCCACCAACAAGCCGAGCTCCAGTACACCAAGTTTTCCCA
CGCACTGGAACAGCTGCAACGTGCTTTAAGGCCTATGCTCTCCGCAATCG
ATTTACTCCGTTCAGCAGGCAATGAGGAAGAGTTGGACCCCATGTCAAGA
GCTCGTATGCACATTTCACTGGCCTACGCTGTCAATTCACTCTTTTGCAT
GTATCTTCGCACACAGGGAATTGACCCTGCCACCCATCCTGTTGCAGAGG
AAATTGCGCGTGTACAAGACGCGTTTGTGCGAATGAGAAAGGTTGAAGCT
GGTGAATCTACAGAACACAAACAACAGCCCAAACGCGATCGACGAAAGCA
TATTGCAAACGCTCGAAAAAGTGCGGCCATGCTTGCAGCTTTGGTGTTTC
CCGAAGAAGAAGATTTGTTACGAGCTTTGCAGGGAAAGCCAGGGAGACTC
GAAAATGAAGGAGAAGGGAATATGGCCTCACGTATTCTGTACAAGACGTT
CAACGAGAACAAGGTGACTACTACTACGGAGCCGAAGCAATCCGAAGAGG
ACAGAACCGGAGAAAAGGAAAATGACAATCGGGAGGAGGGAATTGAAATT
GATTCTGATAGCGAACACGAAGGTAGCTCTAATCTTCAAGCGCAAGGCGA
GAAAGCCGTAGCGGGGGATGAAGAACAATCGGAACACAAGACTCCAGCAA
CTGGAGaaaacaaaaagaaaaagtcaaagaagggcaagaaagacaaaaaa
cgaagcaaagaaaaacgaaaGAAAGCAAAGGCGGAGGAGGTCGAAGATAA
GCAAAAAGAGTTGAATAAAGGTGAGGATAAGGAGAAGGTCAAAAGCAAGA
AGAGGAAATCAAAGAGTGGTCCATCCTCTAGTGACAAGCGGGAAAAGAAA
AGAAAGAAACGAAACATGGAGAAGCTCGAACAACGAAAGGAGTGA
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protein sequence of Ggra4860.t1

>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MERSHQQAELQYTKFSHALEQLQRALRPMLSAIDLLRSAGNEEELDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPATHPVAEEIARVQDAFVRMRKVEA
GESTEHKQQPKRDRRKHIANARKSAAMLAALVFPEEEDLLRALQGKPGRL
ENEGEGNMASRILYKTFNENKVTTTTEPKQSEEDRTGEKENDNREEGIEI
DSDSEHEGSSNLQAQGEKAVAGDEEQSEHKTPATGENKKKKSKKGKKDKK
RSKEKRKKAKAEEVEDKQKELNKGEDKEKVKSKKRKSKSGPSSSDKREKK
RKKRNMEKLEQRKE*
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mRNA from alignment at tig00000090_pilon:313454..314398+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000090_pilon:313454..314398+ (Gracilaria gracilis GNS1m male)
ATGGAACGCTCCCACCAACAAGCCGAGCTCCAGTACACCAAGTTTTCCCA
CGCACTGGAACAGCTGCAACGTGCTTTAAGGCCTATGCTCTCCGCAATCG
ATTTACTCCGTTCAGCAGGCAATGAGGAAGAGTTGGACCCCATGTCAAGA
GCTCGTATGCACATTTCACTGGCCTACGCTGTCAATTCACTCTTTTGCAT
GTATCTTCGCACACAGGGAATTGACCCTGCCACCCATCCTGTTGCAGAGG
AAATTGCGCGTGTACAAGACGCGTTTGTGCGAATGAGAAAGGTTGAAGCT
GGTGAATCTACAGAACACAAACAACAGCCCAAACGCGATCGACGAAAGCA
TATTGCAAACGCTCGAAAAAGTGCGGCCATGCTTGCAGCTTTGGTGTTTC
CCGAAGAAGAAGATTTGTTACGAGCTTTGCAGGGAAAGCCAGGGAGACTC
GAAAATGAAGGAGAAGGGAATATGGCCTCACGTATTCTGTACAAGACGTT
CAACGAGAACAAGGTGACTACTACTACGGAGCCGAAGCAATCCGAAGAGG
ACAGAACCGGAGAAAAGGAAAATGACAATCGGGAGGAGGGAATTGAAATT
GATTCTGATAGCGAACACGAAGGTAGCTCTAATCTTCAAGCGCAAGGCGA
GAAAGCCGTAGCGGGGGATGAAGAACAATCGGAACACAAGACTCCAGCAA
CTGGAGaaaacaaaaagaaaaagtcaaagaagggcaagaaagacaaaaaa
cgaagcaaagaaaaacgaaaGAAAGCAAAGGCGGAGGAGGTCGAAGATAA
GCAAAAAGAGTTGAATAAAGGTGAGGATAAGGAGAAGGTCAAAAGCAAGA
AGAGGAAATCAAAGAGTGGTCCATCCTCTAGTGACAAGCGGGAAAAGAAA
AGAAAGAAACGAAACATGGAGAAGCTCGAACAACGAAAGGAGTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:313454..314398+

>Ggra4860.t1 ID=Ggra4860.t1|Name=Ggra4860.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000090_pilon:313454..314398+ (Gracilaria gracilis GNS1m male)
ATGGAACGCTCCCACCAACAAGCCGAGCTCCAGTACACCAAGTTTTCCCA
CGCACTGGAACAGCTGCAACGTGCTTTAAGGCCTATGCTCTCCGCAATCG
ATTTACTCCGTTCAGCAGGCAATGAGGAAGAGTTGGACCCCATGTCAAGA
GCTCGTATGCACATTTCACTGGCCTACGCTGTCAATTCACTCTTTTGCAT
GTATCTTCGCACACAGGGAATTGACCCTGCCACCCATCCTGTTGCAGAGG
AAATTGCGCGTGTACAAGACGCGTTTGTGCGAATGAGAAAGGTTGAAGCT
GGTGAATCTACAGAACACAAACAACAGCCCAAACGCGATCGACGAAAGCA
TATTGCAAACGCTCGAAAAAGTGCGGCCATGCTTGCAGCTTTGGTGTTTC
CCGAAGAAGAAGATTTGTTACGAGCTTTGCAGGGAAAGCCAGGGAGACTC
GAAAATGAAGGAGAAGGGAATATGGCCTCACGTATTCTGTACAAGACGTT
CAACGAGAACAAGGTGACTACTACTACGGAGCCGAAGCAATCCGAAGAGG
ACAGAACCGGAGAAAAGGAAAATGACAATCGGGAGGAGGGAATTGAAATT
GATTCTGATAGCGAACACGAAGGTAGCTCTAATCTTCAAGCGCAAGGCGA
GAAAGCCGTAGCGGGGGATGAAGAACAATCGGAACACAAGACTCCAGCAA
CTGGAGaaaacaaaaagaaaaagtcaaagaagggcaagaaagacaaaaaa
cgaagcaaagaaaaacgaaaGAAAGCAAAGGCGGAGGAGGTCGAAGATAA
GCAAAAAGAGTTGAATAAAGGTGAGGATAAGGAGAAGGTCAAAAGCAAGA
AGAGGAAATCAAAGAGTGGTCCATCCTCTAGTGACAAGCGGGAAAAGAAA
AGAAAGAAACGAAACATGGAGAAGCTCGAACAACGAAAGGAGTGA
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