Ggra4708.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4708.t1
Unique NameGgra4708.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Homology
BLAST of Ggra4708.t1 vs. uniprot
Match: A0A2V3J3C4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C4_9FLOR)

HSP 1 Score: 598 bits (1543), Expect = 3.590e-208
Identity = 309/547 (56.49%), Postives = 399/547 (72.94%), Query Frame = 0
Query:    7 MRIAIIGGNFLGCATAFYTRKACPNADIRIFEQKPRLGGNKFATVRNVVVGTAAGTDVASAPLLRTLLEDAAIELESKRARSEWALFDWKQDSYNLSQSRSSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPLFVRYARRTGA--YLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASITYGAESLSVLSTIMSQIDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKRSAARHFSQFRLHPSILDETIYPSFSQLYADSNVTHHMNALAALLGMLATAPIPSNLRATPCFLSPQDARHVCPRLATSSSAQCELNTEVAVVEKTSTGWKLFGQGESGERRTLGTYDAVILAAVVDPTRFSVTGLQEDLSKSLALSDKFIEPDQARTEVNVFRYTALVTGTLNADYVRRSSENDLPTVVTVLNSVNCAEIRRVERGTWRVVTGEEPTRTSNVIRTLFTSVENITVYENPKRRYKCTTLSDINGAQAPSFILGTRFLNAACVDRVANDINLDCLSAINTASFFNEKVATWKE 551
            MR+AIIGGN LGCATAFYTRKA P+A I IFE++ RLGGNK AT  + ++G+A  TDV+SAPL   LL  A I+L     R++WALFD K DSY LS   S L+R  + SR +P+ LQL +L +T +F  AF   +  F+RYAR T     LH+P++ LFA  A   FGL+P+  +LR ++FLF VFWVR++A+ITYGAES++VLS++++ +  HL  I KHD+A+SCVTLGHLLSACG+ K+VK+S+   FS++RLHP +L +TI+P+    YADS      +ALA LL MLA +P+P++ R+TP  LS  DA  +CP LAT+SSA   +NT V  V K+S  W LF Q    E+ +LG YDAVILAAVVDP+RFS  GL E L++SLAL+ +  +   +RT +NV +YTA+V G +NADY+R+SS + LPT  TVLNSVNC EI+R+E   WRVVTGE PT+ SNVI TLF SV++I  Y+NP+R Y C  L +++G+ AP+FILGTRFLNAACVDRVAND NLDCLSA+NTASFF E VA WKE
Sbjct:    1 MRVAIIGGNLLGCATAFYTRKANPHAHIHIFERRSRLGGNKLATRAHALLGSACTTDVSSAPLFLHLLSQARIKLTCSPVRAQWALFDLKLDSYKLSSMPSLLLRYCIHSRVIPILLQLASLSATAFFVNAFSRGTNPFLRYARSTPTPTVLHFPTLALFAACATFAFGLVPSPLMLRLFNFLFFVFWVRLIAAITYGAESIAVLSSVINHMHNHLSAIVKHDAASSCVTLGHLLSACGLGKYVKQSSTAFFSKYRLHPELLPDTIHPALVHTYADSTAPRDASALAVLLAMLAKSPLPASQRSTPTILSSTDADSICPALATASSAHLTMNTYVTDVRKSSDRWHLFTQSNHSEKLSLGEYDAVILAAVVDPSRFSAHGLGEHLAESLALTAELSDKSTSRTTLNVAKYTAIVKGVINADYLRKSSPSALPTFTTVLNSVNCTEIQRLEPDVWRVVTGERPTKDSNVIATLFQSVQSIISYDNPQRPYGCAALEELDGSHAPTFILGTRFLNAACVDRVANDFNLDCLSAMNTASFFKEGVAIWKE 547          
BLAST of Ggra4708.t1 vs. uniprot
Match: R7QPA9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPA9_CHOCR)

HSP 1 Score: 347 bits (891), Expect = 2.400e-109
Identity = 211/589 (35.82%), Postives = 318/589 (53.99%), Query Frame = 0
Query:    7 MRIAIIGGNFLGCATAFYTRKAC-------------------------------PNA--DIRIFEQKPRLGGNKFATVR----NVVVGTAAGTDVASAPLLRTLLEDAAIELESKRARSEWALFDWKQDSYNLSQSRSSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPL--FVRYARRTGAYLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASITYGAESLSVLSTIMSQIDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKRSAARHFSQFRLHPSILDETIYPSFSQLYADSNVTH--HMNALAALLGMLATAPIPSNLRATPCFLSPQDARHVCPRLATSSSAQCELNTEVAVVEKTSTGWKLFGQGESGERR---TLGTYDAVILAAVVDPTRFSVTGLQEDLSKSLALSDKFIEPDQARTEV-NVFRYTALVTGTLNADYVRRSSENDLPTVVTVLNSVNCAEIRRVERGTWRVVTGEEPTRTSNVIRTLFTSVENITVYENPKRRYKCTTLSDINGAQAPSFILGTRFLNAACVDRVANDINLDCLSAINTASFFNEKVATWK 550
            MR+A+IG N LG ++AFY RKA                                P++  +I +F++  R GG K+ T++    +V  GTAA  DVA++P L +L+ DA I+   +++  +W++FDW++D YN+ Q  S+L      S F+   LQ+FAL S  +F   F     L  FV   RR   +L              G G++P   ++R +D +F   WV+++  + YG  S S L+T++  I  H+Q I + D+A+SCVTLGHLLSACG  K+ K S    F++F +  S+LD+ + P  +Q Y +S  T   H NALA L   L  +PIP++ RA   +   +    +CP++  ++ A+  L  +V  V+K+          ++ ER    +LG +DAV LAA++DP  F        L + LAL             V NV RY +L+ G +   +  +S  + + + VTVL S NC++++RV  G +RV + E+P   S+++ T+F    +I   E   RRY    + +++G  APSFILGTRF+NAACVDR+AND NLD LSA NTASFF + VA WK
Sbjct:    1 MRVAVIGANLLGSSSAFYIRKALEANRTGPSIAGSEEQSTTGLTSTEVGTDASDPDSTHEIVVFDRLSRPGGFKYQTLQLEDVSVPAGTAADMDVAASPALVSLMNDAGIDPPLRKSMRDWSIFDWEKDDYNIGQVHSALCTIVRESLFLSALLQIFALLSAAHFFQLFQGNGFLLSFVALKRRRRHFLWLRFFWFLVTLFFAG-GVVPIGWLMRLYDSVFFRSWVQVIGGMIYGGHSTSALATVVKHIQHHIQVILERDAASSCVTLGHLLSACGTGKYAKVSVTEFFAKFHIQQSLLDDCVSPGLAQTYGNSACTAGPHTNALAGLFNALVRSPIPTSFRAKATYFDSEQTNALCPQVLKAAGAELRLGIDVRSVQKSGEAQYELSGTDANERHKLVSLGKFDAVALAAIIDPEVFKTDATDYALDQVLALDPALSGLLAGDVRVLNVARYISLIKGEVKPQFFNKSRASSIASHVTVLKSPNCSDVKRVADGVYRVASWEKPEHGSSLLSTVFQGATDIVSIERRPRRYHPAPIRNLDGVGAPSFILGTRFMNAACVDRIANDPNLDILSARNTASFFRDGVANWK 588          
BLAST of Ggra4708.t1 vs. uniprot
Match: A0A7S2ZDA5 (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDA5_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 1.480e-22
Identity = 155/603 (25.70%), Postives = 242/603 (40.13%), Query Frame = 0
Query:    7 MRIAIIGGNFLGCATAFYTRKA-------------CPNAD------------IRIFEQKPRLGGNKFAT--VRNVVVGTAAGTDVASAPL-LRTLLEDAAIELESKRARSE---------WALFDWKQDSYNLSQSR--SSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPLFVRYARRTGAYLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASITYGAESLSVLSTIMSQ-IDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKRSAARHFSQFRLHPSILDETIYPSFSQLYADSNVT-HHMNALAALLGMLATAPIPSNLRATPCFLSPQDARHVCPRLATSSSAQCELNTEVAVVEKTST------------GWKLFGQGESGERRTLGTYDAVILAAVVDPTRFSVTGLQEDLSKSLALSDKFIEPDQARTEVNVFRYTALVTGTLNADYVRRSSENDLPTVVTVLNSVNCAEIRRVERGT----WRVVTGEEPTRTSNVIRTLFTSVENITVYENPKRRYKCTT-LSDINGAQAPSFILGTRFLNAACVDRVANDINLDCLSAINTASFFNEKVATWKE 551
            MR+AI+GGN  GCATA++  K+             C   D            + IFE+   LGGNK  T  + +V V     + + S  + +  +L+  + ELE  R   E         +A++D     Y           I K +AS     FL L      LY     +S      R      A   + S++LF         L    R L FW          I+  +TYG  +   LS   S+    H + + K ++ T  +TLGHL + CG+  +    A   F  F+  P+ +           YA+S +    ++ LAA+L     A +    +     +   +A+ +C  L   S     LN     ++K S              +K+  Q E  E      ++ ++LA    P    +T     +  S  +     E    +T  N  R+ ALV GTLN   +     + +P ++   +  +  +I  V        W V+  EEP     +I  LFT+V  + V E  + +YK    ++ ++G   PS ILGTRF+NAA +DR++ D   D +SA N AS F+  V  W E
Sbjct:    1 MRVAIVGGNLTGCATAWFLEKSYADLRKEYELRARCQEDDSDVLPPPPENFKVTIFEKSSVLGGNKLQTEIIEDVAVEAGRNSTLHSDGVYVGEVLDQMSSELELDRFWLEGTGYHSVRSFAIYDADNSEYLFRHGGYWGLDILKVVASSIFTRFLLLVGCGFALYHGRFEMSG---LARLKTIAAAVFVFISLVLFPRRF-----LASVNRSLAFWSS-------AIVGLMTYGTTA--ALSRGASKGFTDHFKAMLKANATTKSITLGHLFNRCGLGSYSSTDAESAFRSFKFLPAFVRHYSDTQLQVDYANSQLAAKDVSTLAAMLCQ-QRADVSEGDKVLR--IRGGNAK-LCEALGRGSRQM--LNAAAVKIKKRSAEEIESGKQAYILSYKIPAQAEPVEEE----FNGIVLAC--SPNMEELTFETPGMDNSGDVFGYTKEILTTQTPRNRSRWLALVAGTLNHRCLGHLIADTVPDMILSTSGKDWLKIECVAESKKGKIWSVICTEEPKAGEGLIAELFTNVREMKVRERSQPKYKTREFINGVDGNDVPSLILGTRFINAAGMDRLSCDPETDIISAWNAASLFSVGV-NWME 573          
BLAST of Ggra4708.t1 vs. uniprot
Match: A0A7S3E6H6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6H6_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 1.270e-6
Identity = 84/329 (25.53%), Postives = 128/329 (38.91%), Query Frame = 0
Query:    7 MRIAIIGGNFLGCATAFYTRKA-------------CPNAD------------IRIFEQKPRLGGNKFAT--VRNVVVGTAAGTDVASAPL-LRTLLEDAAIELESKRARSE---------WALFDWKQDSYNLSQSR--SSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPLFVRYARRTGAYLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASITYGAESLSVLSTIMSQ-IDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKRSAARHFSQFRLHPSILDETIYPSFSQLYADSNVT-HHMNALAALL 294
            MR+AI+GGN  GCATA++  K+             C   D            + IFE+   LGGNK  T  + +V V     + + S  + +  +L+  + ELE  R   E         +A++D     Y           I K +AS     FL L      LY     +S      R      A   + S++LF         L    R L FW          I+  +TYG  +   LS   S+    H + + K ++ T  +TLGHL + CG+  +    A   F  F+  P+ +           YA+S +    ++ LAA+L
Sbjct:    1 MRVAIVGGNLTGCATAWFLEKSYADLRKEYELRARCQEDDSDVLPPPPENFKVTIFEKSSVLGGNKLQTEIIEDVAVEAGRNSTLHSDGVYVGEVLDQMSSELELDRFWLEGTGYHSVRSFAIYDADNSEYLFRHGGYWGLDILKVVASSIFTRFLLLVGCGFALYHGRFEMSG---LARLKTIAAAVFVFISLVLFPRRF-----LASVNRSLAFWSS-------AIVGLMTYGTTA--ALSRGASKGFTDHFKAMLKANATTKSITLGHLFNRCGLGSYSSTDAESAFRSFKFLPAFVRHYSDTQLQVDYANSQLAAKDVSTLAAML 312          
BLAST of Ggra4708.t1 vs. uniprot
Match: A0A2V3J5V7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5V7_9FLOR)

HSP 1 Score: 62.4 bits (150), Expect = 1.530e-6
Identity = 99/411 (24.09%), Postives = 161/411 (39.17%), Query Frame = 0
Query:    7 MRIAIIGGNFLGCATAF-----------YTRKACPNADIRIFEQKPRLGGNKFATVR-----NVVVGTAAGTDVASAPLLRTLL-----EDAAIELESKR--------ARS----------------------EWALFDWKQDSYNLSQSRSSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPLFVRYARRTGAYLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASITYGAESLSVLSTIMSQIDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKRSAARHFSQFRLHPSILDETIYPSFSQ--LYADSNVTHHMNALAALLGMLATAPIPSNLRATPCFLSPQDARHVCPRLATSSSA----QCELNTEVAVV---EKTSTGWKLFGQGES 357
            MRIA+IGGN LGCAT                 +    ++ I E +PRLGGN   ++       V VG      +     L  L+     E A I + +KR        AR                        +A++DW+ D Y L  S   L+   L  RF+   +      + L ++   L R+ +  R  R T         +L    A L   ++   R++  W   +  +       I YG     V  +    + +HL  +   + AT  +++G L+    +  +++ +A    +QF+     +   I P   Q  L AD N   H+NALA    +L + P+ ++ R   C +SP +A  +C  L  ++ A      +LNT V  +   E+T+     F  G S
Sbjct:    1 MRIAVIGGNLLGCATTLDLALVQELDNETPSDSTTVFEVTILETQPRLGGNSLRSIALEDESRVEVGAYRTLPILPGTYLNDLVQTVNDERATISIFNKRISLPGSTIARRGHAGAATIHRPWSTGTNGSLVRSYAIWDWQNDQYPLRHSGWPLL--DLLHRFLNNNIWRSITLAALIYSIEQL-RTVVHGRINRAT---------MLAQCIAFLVLTVLSPQRLVAMWQHNYSFWGTTAPLLIKYGITPAIVRGSTTGFV-KHLSKMNTRNVATCSISVGTLVRRAELDSYLRSTAMDFVNQFKYDHEYVHRHIEPVLVQQSLGADIN---HVNALALQFSLLDSDPVNNDARDRLCTISPDNAT-LCAALVDAAKATMPVHVKLNTTVTAIIYNERTNEYDITFADGAS 394          
The following BLAST results are available for this feature:
BLAST of Ggra4708.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J3C43.590e-20856.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QPA92.400e-10935.82Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZDA51.480e-2225.70Hypothetical protein n=5 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E6H61.270e-625.53Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3J5V71.530e-624.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 3..86
e-value: 1.3E-5
score: 27.2
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 4..377
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..551
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 175..185
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 114..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 136..154
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 186..203
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..174
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 118..140
NoneNo IPR availableTMHMMTMhelixcoord: 155..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:18860..20515 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4708.t1Ggra4708.t1Gracilaria gracilis GNS1m malemRNAtig00000065_pilon 18860..20515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4708.t1 ID=Ggra4708.t1|Name=Ggra4708.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MAVEENMRIAIIGGNFLGCATAFYTRKACPNADIRIFEQKPRLGGNKFAT
VRNVVVGTAAGTDVASAPLLRTLLEDAAIELESKRARSEWALFDWKQDSY
NLSQSRSSLIRKTLASRFVPVFLQLFALCSTLYFAAAFLSRSPLFVRYAR
RTGAYLHYPSILLFANAAVLGFGLIPATRVLRFWDFLFHVFWVRILASIT
YGAESLSVLSTIMSQIDQHLQTIQKHDSATSCVTLGHLLSACGMAKFVKR
SAARHFSQFRLHPSILDETIYPSFSQLYADSNVTHHMNALAALLGMLATA
PIPSNLRATPCFLSPQDARHVCPRLATSSSAQCELNTEVAVVEKTSTGWK
LFGQGESGERRTLGTYDAVILAAVVDPTRFSVTGLQEDLSKSLALSDKFI
EPDQARTEVNVFRYTALVTGTLNADYVRRSSENDLPTVVTVLNSVNCAEI
RRVERGTWRVVTGEEPTRTSNVIRTLFTSVENITVYENPKRRYKCTTLSD
INGAQAPSFILGTRFLNAACVDRVANDINLDCLSAINTASFFNEKVATWK
E*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf