Ggra4707.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4707.t1
Unique NameGgra4707.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Homology
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A2V3IG61 (COBW domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG61_9FLOR)

HSP 1 Score: 191 bits (486), Expect = 3.660e-53
Identity = 160/475 (33.68%), Postives = 187/475 (39.37%), Query Frame = 0
Query:    1 MTFVTNTTAAPKDT----AEPPLKKMRVSELLGITADQVA--PHHDKTVLTSSGTWAAAEAITNAMPKGDG-----------------------------------------------------------------------------------------------------LANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDLTDDAQTE--------------------------------------------------------------------------------------------------------------KDQASHLEQEGFSSISFVSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQCGRARMAGGRGTQEPTCADWRASWDKQQITKMLEMCIVKPGEESEDEYEDDGGVYMDEE 258
            MT ++N  AAP+ T    AEP LKKM+VSELLGI+ D ++  P H KT+ TSSGTWAAAEAITNAMP+GDG                                                                                                     LANPKPIMDSIEATEL +DLYLDQVLTVVDSSAW + HY S+TA++QI+AADTVLLSKTDL    Q E                                                                                                              + + SHLEQEGFSSISFVSE+ FSLRRFKDEFME LPRGVFR+KG++      + F                  G   +       R   DK  I+ MLE C+VK GEESE+E+  D GVY D E
Sbjct:    1 MTAISNPEAAPQPTRQHAAEPSLKKMKVSELLGISTDHLSFQPDHSKTLFTSSGTWAAAEAITNAMPRGDGIPLTLLTGFLGAGKSTVLNYILKADHGLKIAVLINEFGQVDIDNQLVDTVAKGQEGEPILLNNGCMCCTVSNGFIDAVKAIMDKADETGRLPDYLIVETTGLANPKPIMDSIEATELRRDLYLDQVLTVVDSSAWTDQHYESDTAYQQIDAADTVLLSKTDLATQQQVEDVVKSVLSIRPNARILRSQNGYVPISALFDLGISLGKKAAQEKIEKSADKDAKPSPPQEGHKHQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADGKCCEEKKEQRKSHLEQEGFSSISFVSEHAFSLRRFKDEFMEQLPRGVFRAKGLLWFANYGARFVFHWSGARYNVDEQEWPEGMERKNQLVLIGR-ELDKSAISTMLERCVVKDGEESEEEF--DEGVYADGE 472          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A1X6P6K7 (CobW C-terminal domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6K7_PORUM)

HSP 1 Score: 105 bits (263), Expect = 1.000e-21
Identity = 84/296 (28.38%), Postives = 124/296 (41.89%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDLTD----DAQTEK-----------------------------------------------DQAS-----------------------------------------------------------HLEQEGFSSISFVSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQCGRARMAGGRGTQEPTCADWRASWDKQQITKMLEMCIVKPGEESEDEYEDD 250
            G+A+P+PIM++++ATEL+++LY DQVLTVVD+S + +DHYGSETA +Q+ +ADTVLLSKTDL      DA  ++                                               D A+                                                           HLE+EGFS++SF +  PF L  F+D+F++ LP GVFR+KG++      S F + +     Q  +     G           R + D+  +   LE C+V+P E+SED+   D
Sbjct:  248 GVADPEPIMNAVQATELAEELYWDQVLTVVDASQFGDDHYGSETARKQVHSADTVLLSKTDLMTPEAVDAAVQRVIQMKPNARILRSQRGQVPVAALFDLGMSLRREPKQKTVKQGAAPGPDSATVAGAAGANGAAKGGAPHSHAPGEACKDHXXXXXXXXXXXXXXXXXXXXXXXEAAAAPPTHLEREGFSTVSFAANKPFKLSTFRDKFVDTLPVGVFRAKGLLWFRHYPSRFLLQVSGKRFQMDQDVWPKGTAPNIQLVVIGR-NLDRNALVASLEACLVEPLEDSEDDMTSD 542          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A7S0ZDR1 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDR1_9RHOD)

HSP 1 Score: 79.0 bits (193), Expect = 8.800e-13
Identity = 65/259 (25.10%), Postives = 103/259 (39.77%), Query Frame = 0
Query:   60 MPKGDGLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAW-DEDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKD-------------------------------------------------------------------------------QASHLEQEGFSSISFVSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQCGRARMAGGRGTQEPT-CADWRASWDKQQITKMLEMCIV 237
            M +  G+A+P PI+ +++ TEL  ++Y+DQ+LTVVD++ +     Y S  A  QI+ ADT+L+SKTDL DD+  EK                                                                                +++HL+ +GF SISF  E PF L +F+ +F+  +P GV+RSKG++        F   L     Q  +        T++         + D + IT  L  C++
Sbjct:  143 MIETSGIADPAPIIATLQETELDDEVYIDQILTVVDAAHYLTSSEYTSVAAVNQIKLADTLLISKTDLVDDSILEKTIESLLRVQPRARILKSNYGRVSIGALFDIKIALDTTLCRTGSDKRTRYAECSAGEHGDCTLGETCRKRKVSSSLSRTQVESNHLDTDGFESISFYIEKPFDLNKFRKKFVNKMPDGVYRSKGLLWFAGHALRFVFQLSGKRFQIEQVDWPSPEVTKKSNQLVVIGRNLDSESITHTLNSCVI 401          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A7S1XFP9 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFP9_9RHOD)

HSP 1 Score: 79.0 bits (193), Expect = 9.730e-13
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWD-EDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKDQASHLE 141
            GLA+P+PIM SI  +EL++ +YLDQVLTVVD+++WD + HY S TA +QI+ ADT+LLSKTDL    +  K  A  LE
Sbjct:  165 GLADPEPIMGSIRESELAEWVYLDQVLTVVDATSWDGKTHYDSGTAIKQIQFADTILLSKTDLISPERVTKVVADILE 242          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A6I5R3B7 (GTP-binding protein n=1 Tax=Leptolyngbya sp. SIO1E4 TaxID=2607768 RepID=A0A6I5R3B7_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 1.370e-12
Identity = 56/170 (32.94%), Postives = 80/170 (47.06%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDLTDDA---------QTEKDQA---------------------------------------------SHLEQEGFSSISFVSEYPFSLRRFKDEFMEVLPRGVFRSKGVI 180
            GLA+P PIM +  +TEL    +LD V+TVVDS A+ EDH+GS+ A  Q+   D +LL+K DL   +         Q+ K+QA                                             +HL Q+GF S+ F S+ PFSL +F+   +  LP  VFR+KG++
Sbjct:  107 GLADPLPIMVTFLSTELKVFTHLDSVITVVDSEAFTEDHFGSDAALSQLLYGDIILLNKADLVPASKLTQLEAYIQSIKEQARFLRCSLTTESSHLPLSALLDVGLATPPVLPPTENVREKNGPKVSTHLPQDGFVSVPFKSDRPFSLTKFEHFLVTQLPATVFRAKGIL 276          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A7S0ZDY0 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDY0_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 5.890e-7
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDH-YGSETAHRQIEAADTVLLSKTDLTD 128
            G+A+P PI+++I +++L   + LD V+T+VD+ ++D    + S+ A+ QIEAADT+LLSKTDL D
Sbjct:  213 GIADPVPIVNTITSSDLENKIRLDSVVTLVDAESFDTKKIFDSDAAYNQIEAADTILLSKTDLID 277          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A2W1JBH0 (Metal chaperone YciC n=1 Tax=Acaryochloris sp. RCC1774 TaxID=1764569 RepID=A0A2W1JBH0_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 9.440e-7
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0
Query:   51 AAAEAITNAMPKGDGLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKDQASHLEQE 143
            A  + +   + +  G+A+P PIM +   +EL     LD VLTVVD+  +  +H+ S+TA RQI+  D +LL+K DL  D Q      SHLE E
Sbjct:   98 AGKQGLEAILLETSGVADPYPIMLTFRVSELWSLTRLDAVLTVVDAETFTAEHFQSQTALRQIQYGDIILLNKADLVGDKQL-----SHLEAE 185          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A3G6X2E6 (GTP-binding protein n=2 Tax=Synechococcus elongatus TaxID=32046 RepID=A0A3G6X2E6_SYNEL)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-6
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEK 134
            G+A+P P++ +   TEL     LD +LT+VDSS++D  HY S+ A  QI+ AD +LL+KTDL D  + +K
Sbjct:  112 GIADPIPLLLTFLGTELKSLTRLDAILTLVDSSSFDVTHYRSQAALNQIQYADQILLTKTDLIDAKKCKK 181          
BLAST of Ggra4707.t1 vs. uniprot
Match: GTP-binding protein n=1 Tax=Nostoc sp. CHAB 5715 TaxID=2780400 RepID=UPI001E4A4B3D (GTP-binding protein n=1 Tax=Nostoc sp. CHAB 5715 TaxID=2780400 RepID=UPI001E4A4B3D)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-6
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDL 126
            G+A+P PI+ +   TEL     LD +LTVVD+ A++E+H+ SE A +QI   D +LL+KTDL
Sbjct:  112 GVADPLPIILTFLGTELRDFTNLDSILTVVDAEAFNEEHFHSEAALKQITYGDIILLNKTDL 173          
BLAST of Ggra4707.t1 vs. uniprot
Match: A0A1B7VCD4 (Cobalamin biosynthesis protein CobW n=16 Tax=Nostocales TaxID=1161 RepID=A0A1B7VCD4_9NOST)

HSP 1 Score: 58.9 bits (141), Expect = 3.270e-6
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   65 GLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWDEDHYGSETAHRQIEAADTVLLSKTDL 126
            G+A+P PI+ +   TEL     +D +LTVVD+ A+DE+H+ SE A +QI   D +LL+KTDL
Sbjct:  112 GVADPLPIILTFFGTELRDLTNIDSILTVVDAEAFDEEHFQSEAALKQITYGDIILLNKTDL 173          
The following BLAST results are available for this feature:
BLAST of Ggra4707.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2V3IG613.660e-5333.68COBW domain-containing protein 1 n=1 Tax=Gracilari... [more]
A0A1X6P6K71.000e-2128.38CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S0ZDR18.800e-1325.10Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1XFP99.730e-1356.41Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6I5R3B71.370e-1232.94GTP-binding protein n=1 Tax=Leptolyngbya sp. SIO1E... [more]
A0A7S0ZDY05.890e-747.69Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2W1JBH09.440e-739.78Metal chaperone YciC n=1 Tax=Acaryochloris sp. RCC... [more]
A0A3G6X2E61.270e-645.71GTP-binding protein n=2 Tax=Synechococcus elongatu... [more]
GTP-binding protein n=1 Tax=Nostoc sp. CHAB 5715 TaxID=2780400 RepID=UPI001E4A4B3D2.110e-648.39GTP-binding protein n=1 Tax=Nostoc sp. CHAB 5715 T... [more]
A0A1B7VCD43.270e-648.39Cobalamin biosynthesis protein CobW n=16 Tax=Nosto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 123..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..298
NoneNo IPR availablePANTHERPTHR13748COBW-RELATEDcoord: 64..134
NoneNo IPR availablePANTHERPTHR13748:SF6547 KD PROTEINcoord: 135..237
NoneNo IPR availablePANTHERPTHR13748COBW-RELATEDcoord: 135..237
NoneNo IPR availablePANTHERPTHR13748:SF6547 KD PROTEINcoord: 64..134
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 60..148
e-value: 1.1E-13
score: 53.4
IPR003495CobW/HypB/UreG, nucleotide-binding domainPFAMPF02492cobWcoord: 65..134
e-value: 3.9E-12
score: 46.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:12542..14176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1Ggra4707.t1Gracilaria gracilis GNS1m malemRNAtig00000065_pilon 12542..14176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MTFVTNTTAAPKDTAEPPLKKMRVSELLGITADQVAPHHDKTVLTSSGTW
AAAEAITNAMPKGDGLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWD
EDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKDQASHLEQEGFSSISF
VSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQC
GRARMAGGRGTQEPTCADWRASWDKQQITKMLEMCIVKPGEESEDEYEDD
GGVYMDEEAEAAMWRDEMSGAAIEAAAGKDVEGVETTTEMDAKREVGAGG
EHSAGGVSGNVANQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003495CobW/HypB/UreG_dom