Ggra4707.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4707.t1
Unique NameGgra4707.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:12542..14176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog113355.CM001775_gene590
PFAMsCobW_C,cobW
Max annot lvl1117|Cyanobacteria
Evalue5.35e-14
EggNOG OGsCOG0523@1|root,COG0523@2|Bacteria,1G3EI@1117|Cyanobacteria
DescriptionCobalamin synthesis protein cobW C-terminal domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4707Ggra4707Gracilaria gracilis GNS1m malegenetig00000065_pilon 12542..14176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1Ggra4707.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 12542..14176 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1.stop1Ggra4707.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 12542..12544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1.CDS1Ggra4707.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 12542..13093 -
Ggra4707.t1.CDS2Ggra4707.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000065_pilon 13477..13676 -
Ggra4707.t1.CDS3Ggra4707.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000065_pilon 13984..14176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1.exon1Ggra4707.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 12542..13093 -
Ggra4707.t1.exon2Ggra4707.t1.exon2Gracilaria gracilis GNS1m maleexontig00000065_pilon 13477..13676 -
Ggra4707.t1.exon3Ggra4707.t1.exon3Gracilaria gracilis GNS1m maleexontig00000065_pilon 13984..14176 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1.intron1Ggra4707.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000065_pilon 13094..13476 -
Ggra4707.t1.intron2Ggra4707.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000065_pilon 13677..13983 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4707.t1.start1Ggra4707.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 14174..14176 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MTFVTNTTAAPKDTAEPPLKKMRVSELLGITADQVAPHHDKTVLTSSGTW
AAAEAITNAMPKGDGLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWD
EDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKDQASHLEQEGFSSISF
VSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQC
GRARMAGGRGTQEPTCADWRASWDKQQITKMLEMCIVKPGEESEDEYEDD
GGVYMDEEAEAAMWRDEMSGAAIEAAAGKDVEGVETTTEMDAKREVGAGG
EHSAGGVSGNVANQ*
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spliced messenger RNA

>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000065_pilon:12542..14176- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTTGTCACAAACACCACTGCCGCCCCGAAAGATACGGCAGAGCC
TCCGCTAAAGAAAATGAGAGTGTCCGAGCTTCTCGGCATCACGGCTGACC
AAGTCGCTCCTCATCATGACAAGACAGTACTCACCTCCTCCGGCACCTGG
GCCGCTGCCGAGGCCATCACAAACGCCATGCCCAAGGGAGACGGGCTTGC
AAACCCCAAACCAATCATGGACTCTATCGAAGCCACAGAGCTCAGCCAGG
ATCTGTACCTCGATCAGGTGCTCACTGTGGTCGATTCAAGCGCCTGGGAC
GAGGACCACTACGGCTCTGAGACGGCTCACAGACAGATTGAAGCCGCTGA
CACAGTGCTTCTGTCCAAGACGGACCTGACTGATGATGCACAAACGGAAA
AGGACCAGGCTTCACACTTGGAGCAGGAGGGATTCAGCAGCATTTCATTC
GTATCAGAGTATCCATTCTCTCTAAGACGTTTCAAAGATGAGTTCATGGA
AGTGCTACCCAGAGGGGTATTCCGGTCTAAGGGGGTTATTGTGGTTCTCG
AACTACGAAGCACGTTTTGTATTTCACTGGAGTGGGTCTCGATACAATGT
GGACGAGCAAGGATGGCCGGAGGGCGTGGAACGCAAGAACCAACTTGTGC
TGATTGGCGCGCGAGCTGGGACAAGCAGCAGATTACAAAAATGTTGGAAA
TGTGTATCGTGAAGCCCGGGGAGGAGAGCGAAGACGAGTACGAGGATGAT
GGCGGCGTGTACATGGACGAAGAAGCGGAAGCGGCGATGTGGAGGGACGA
AATGTCGGGCGCTGCGATTGAAGCTGCTGCAGGGAAGGACGTGGAAGGTG
TGGAAACGACGACGGAGATGGACGCGAAGCGCGAGGTTGGCGCGGGCGGG
GAGCATAGTGCCGGAGGTGTCAGCGGAAACGTGGCCAATCAGTGA
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protein sequence of Ggra4707.t1

>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MTFVTNTTAAPKDTAEPPLKKMRVSELLGITADQVAPHHDKTVLTSSGTW
AAAEAITNAMPKGDGLANPKPIMDSIEATELSQDLYLDQVLTVVDSSAWD
EDHYGSETAHRQIEAADTVLLSKTDLTDDAQTEKDQASHLEQEGFSSISF
VSEYPFSLRRFKDEFMEVLPRGVFRSKGVIVVLELRSTFCISLEWVSIQC
GRARMAGGRGTQEPTCADWRASWDKQQITKMLEMCIVKPGEESEDEYEDD
GGVYMDEEAEAAMWRDEMSGAAIEAAAGKDVEGVETTTEMDAKREVGAGG
EHSAGGVSGNVANQ*
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mRNA from alignment at tig00000065_pilon:12542..14176-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000065_pilon:12542..14176- (Gracilaria gracilis GNS1m male)
ATGACTTTTGTCACAAACACCACTGCCGCCCCGAAAGATACGGCAGAGCC
TCCGCTAAAGAAAATGAGAGTGTCCGAGCTTCTCGGCATCACGGCTGACC
AAGTCGCTCCTCATCATGACAAGACAGTACTCACCTCCTCCGGCACCTGG
GCCGCTGCCGAGGCCATCACAAACGCCATGCCCAAGGGAGACGGTATCCC
CCTCACGTTGCTCACCGGCCTTTCTGGGCGCCGGCAAGTCCACCGTGCTC
AACTACATTCTCAAGGGCCGACCATGGACTCAAAATCGCCGTTCTTATCA
ATGAGTTTGGCAAGGTTGATATAGACAACCAGTTGGTGGATACGGTTGCC
AAGGGCCAGGAAGGTGAACCAGTCATGCTCAACAACGGGCTGCATGTGTT
GCACCGTGTCCAATGGTTTCATCGACGCCGTGCATACAATTCTGCAAAAG
GCAGATGAGGCCGGACCGTATCCCAGACTATTTCATTGTGGAGACCACAG
GGCTTGCAAACCCCAAACCAATCATGGACTCTATCGAAGCCACAGAGCTC
AGCCAGGATCTGTACCTCGATCAGGTGCTCACTGTGGTCGATTCAAGCGC
CTGGGACGAGGACCACTACGGCTCTGAGACGGCTCACAGACAGATTGAAG
CCGCTGACACAGTGCTTCTGTCCAAGACGGACCTGACTGATGATGCACAA
GTGAGCCAACGTTGTCAAGTCTATTCTTTCTATCCGTCCTAACGCCAGGA
TTCTACGTAGTCAGAAGGGACATGTTCCCATTGCAGCTTTGTTCGATCTG
GGGATTTCTCTGAACTCCAAGCCGAAGGCAAGGAAGAACGCAAAGGCCTG
TACAGAACGGAAAAGTGGCTCAGGAAAGCGGAAAGTTGATTAAAGAAAAC
GGAAAGCTGACTGAACAGAACGGACATGGCACATCAGGACAGAAGCATGC
CCATGAGGGTGATGGACAGTACCAACGGTGCACACAATGATGAGCATAAG
CACGAGCACAAGCACGAACACAAGCATGACCATGGACATGACCACAAGCA
CACCGCTGATGGAAAGTGTTTGCGAGCCAAAAGACGGAAAAGGACCAGGC
TTCACACTTGGAGCAGGAGGGATTCAGCAGCATTTCATTCGTATCAGAGT
ATCCATTCTCTCTAAGACGTTTCAAAGATGAGTTCATGGAAGTGCTACCC
AGAGGGGTATTCCGGTCTAAGGGGGTTATTGTGGTTCTCGAACTACGAAG
CACGTTTTGTATTTCACTGGAGTGGGTCTCGATACAATGTGGACGAGCAA
GGATGGCCGGAGGGCGTGGAACGCAAGAACCAACTTGTGCTGATTGGCGC
GCGAGCTGGGACAAGCAGCAGATTACAAAAATGTTGGAAATGTGTATCGT
GAAGCCCGGGGAGGAGAGCGAAGACGAGTACGAGGATGATGGCGGCGTGT
ACATGGACGAAGAAGCGGAAGCGGCGATGTGGAGGGACGAAATGTCGGGC
GCTGCGATTGAAGCTGCTGCAGGGAAGGACGTGGAAGGTGTGGAAACGAC
GACGGAGATGGACGCGAAGCGCGAGGTTGGCGCGGGCGGGGAGCATAGTG
CCGGAGGTGTCAGCGGAAACGTGGCCAATCAGTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:12542..14176-

>Ggra4707.t1 ID=Ggra4707.t1|Name=Ggra4707.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000065_pilon:12542..14176- (Gracilaria gracilis GNS1m male)
ATGACTTTTGTCACAAACACCACTGCCGCCCCGAAAGATACGGCAGAGCC
TCCGCTAAAGAAAATGAGAGTGTCCGAGCTTCTCGGCATCACGGCTGACC
AAGTCGCTCCTCATCATGACAAGACAGTACTCACCTCCTCCGGCACCTGG
GCCGCTGCCGAGGCCATCACAAACGCCATGCCCAAGGGAGACGGGCTTGC
AAACCCCAAACCAATCATGGACTCTATCGAAGCCACAGAGCTCAGCCAGG
ATCTGTACCTCGATCAGGTGCTCACTGTGGTCGATTCAAGCGCCTGGGAC
GAGGACCACTACGGCTCTGAGACGGCTCACAGACAGATTGAAGCCGCTGA
CACAGTGCTTCTGTCCAAGACGGACCTGACTGATGATGCACAAACGGAAA
AGGACCAGGCTTCACACTTGGAGCAGGAGGGATTCAGCAGCATTTCATTC
GTATCAGAGTATCCATTCTCTCTAAGACGTTTCAAAGATGAGTTCATGGA
AGTGCTACCCAGAGGGGTATTCCGGTCTAAGGGGGTTATTGTGGTTCTCG
AACTACGAAGCACGTTTTGTATTTCACTGGAGTGGGTCTCGATACAATGT
GGACGAGCAAGGATGGCCGGAGGGCGTGGAACGCAAGAACCAACTTGTGC
TGATTGGCGCGCGAGCTGGGACAAGCAGCAGATTACAAAAATGTTGGAAA
TGTGTATCGTGAAGCCCGGGGAGGAGAGCGAAGACGAGTACGAGGATGAT
GGCGGCGTGTACATGGACGAAGAAGCGGAAGCGGCGATGTGGAGGGACGA
AATGTCGGGCGCTGCGATTGAAGCTGCTGCAGGGAAGGACGTGGAAGGTG
TGGAAACGACGACGGAGATGGACGCGAAGCGCGAGGTTGGCGCGGGCGGG
GAGCATAGTGCCGGAGGTGTCAGCGGAAACGTGGCCAATCAGTGA
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