Ggra4631.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4631.t1
Unique NameGgra4631.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Homology
The following BLAST results are available for this feature:
BLAST of Ggra4631.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 171..235
e-value: 1.2E-4
score: 31.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 170..202
e-value: 6.7E-8
score: 32.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 171..235
score: 9.996021
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 150..239
e-value: 8.4E-12
score: 46.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..107
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableCDDcd16448RING-H2coord: 171..235
e-value: 1.54244E-8
score: 48.2171
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 165..240
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:184047..185072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1Ggra4631.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 184047..185072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MRGVLNLLLSIAAGAAIGVLIPQLPFLNDPFDEEYQRIEENLDAERAHGE
HQRDDQQAEHSQSEHSPASSHVSVPASYSEESMSVQSEPTQRGTESHPLR
LSSSERRQLSPFSIQSRQLSPLFFQSREDPPSAYPLPVPHEVSIIRDADV
LAKLDIAAPISASKDSDDGKCTFCIEPVVPGQKARTTPCNHLFHASCLEQ
WVLYVTANLMNVAAYWLNHDGSIEFKSRFPFCPNCAKFLDVVPRHEWRVV
LLTALAVALSVDSTNQAVALYERDVVVVDRSSPPVTIHIGAEEYGFRPRW
MDENENYHYTFVARNEGCRVLLRVLAYPIVSASDPAIDQES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD