Ggra4631.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4631.t1
Unique NameGgra4631.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:184047..185072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra009015.1-P
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009056,GO:0009057,GO:0009791,GO:0009908,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022414,GO:0030163,GO:0031624,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0040008,GO:0042127,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0045926,GO:0046620,GO:0046621,GO:0048367,GO:0048437,GO:0048518,GO:0048519,GO:0048523,GO:0048608,GO:0048638,GO:0048640,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051603,GO:0051865,GO:0061458,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0090567,GO:0099402,GO:0140096,GO:1900055,GO:1900057,GO:1901564,GO:1901565,GO:1901575,GO:1905623,GO:2000024,GO:2000026
Evalue3.11e-05
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37P10@33090|Viridiplantae,3G8M1@35493|Streptophyta,3HYM3@3699|Brassicales
Descriptionzinc finger (C3HC4-type RING finger) family protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4631Ggra4631Gracilaria gracilis GNS1m malegenetig00000941_pilon 184047..185072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1.start1Ggra4631.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 184047..184049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1.CDS1Ggra4631.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 184047..185072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1.exon1Ggra4631.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 184047..185072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1.stop1Ggra4631.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 185070..185072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4631.t1Ggra4631.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 184047..185072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MRGVLNLLLSIAAGAAIGVLIPQLPFLNDPFDEEYQRIEENLDAERAHGE
HQRDDQQAEHSQSEHSPASSHVSVPASYSEESMSVQSEPTQRGTESHPLR
LSSSERRQLSPFSIQSRQLSPLFFQSREDPPSAYPLPVPHEVSIIRDADV
LAKLDIAAPISASKDSDDGKCTFCIEPVVPGQKARTTPCNHLFHASCLEQ
WVLYVTANLMNVAAYWLNHDGSIEFKSRFPFCPNCAKFLDVVPRHEWRVV
LLTALAVALSVDSTNQAVALYERDVVVVDRSSPPVTIHIGAEEYGFRPRW
MDENENYHYTFVARNEGCRVLLRVLAYPIVSASDPAIDQES*
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spliced messenger RNA

>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000941_pilon:184047..185072+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGCGTGCTCAACTTGTTGCTCTCCATTGCGGCTGGCGCCGCTAT
TGGAGTTCTCATCCCGCAGCTGCCTTTCTTGAATGATCCGTTCGATGAGG
AGTACCAGCGTATTGAAGAAAACCTCGATGCTGAGCGTGCTCATGGAGAG
CACCAGCGCGACGATCAGCAGGCTGAGCATTCGCAAAGTGAGCATAGTCC
CGCTTCCTCTCATGTGTCAGTACCTGCGTCTTATTCGGAAGAAAGTATGT
CGGTGCAGAGTGAACCCACGCAACGAGGCACTGAGTCGCATCCATTGCGT
CTATCATCTAGCGAGCGACGTCAATTGTCGCCATTTTCTATTCAATCGCG
TCAATTGTCTCCATTGTTTTTTCAGTCGCGTGAAGACCCTCCATCTGCTT
ATCCACTTCCCGTTCCGCACGAGGTTTCAATTATTCGCGATGCAGATGTC
TTGGCAAAGTTAGATATTGCAGCTCCAATCTCCGCCTCCAAGGATTCTGA
CGACGGCAAGTGCACGTTTTGTATTGAACCCGTTGTACCTGGTCAGAAAG
CTCGCACTACCCCGTGCAACCATCTGTTTCACGCCTCCTGTTTGGAGCAA
TGGGTATTGTATGTCACTGCCAACTTGATGAACGTGGCCGCGTATTGGCT
GAATCATGATGGATCCATTGAATTCAAGTCTCGCTTCCCATTTTGTCCGA
ACTGCGCTAAGTTTCTTGATGTCGTCCCCAGGCACGAATGGAGAGTGGTG
TTGCTCACGGCTCTGGCAGTCGCACTGTCTGTGGACAGCACAAATCAAGC
CGTGGCTCTGTATGAAAGGGATGTCGTTGTGGTGGATAGGTCTAGTCCAC
CGGTAACCATTCATATTGGGGCTGAAGAGTATGGTTTCAGGCCGCGCTGG
ATGGATGAGAATGAAAACTACCATTACACGTTTGTCGCTCGCAATGAAGG
TTGTAGGGTGTTGCTCAGGGTCCTTGCTTACCCTATTGTTTCAGCCAGTG
ATCCTGCCATAGACCAGGAAAGTTGA
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protein sequence of Ggra4631.t1

>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MRGVLNLLLSIAAGAAIGVLIPQLPFLNDPFDEEYQRIEENLDAERAHGE
HQRDDQQAEHSQSEHSPASSHVSVPASYSEESMSVQSEPTQRGTESHPLR
LSSSERRQLSPFSIQSRQLSPLFFQSREDPPSAYPLPVPHEVSIIRDADV
LAKLDIAAPISASKDSDDGKCTFCIEPVVPGQKARTTPCNHLFHASCLEQ
WVLYVTANLMNVAAYWLNHDGSIEFKSRFPFCPNCAKFLDVVPRHEWRVV
LLTALAVALSVDSTNQAVALYERDVVVVDRSSPPVTIHIGAEEYGFRPRW
MDENENYHYTFVARNEGCRVLLRVLAYPIVSASDPAIDQES*
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mRNA from alignment at tig00000941_pilon:184047..185072+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000941_pilon:184047..185072+ (Gracilaria gracilis GNS1m male)
ATGCGCGGCGTGCTCAACTTGTTGCTCTCCATTGCGGCTGGCGCCGCTAT
TGGAGTTCTCATCCCGCAGCTGCCTTTCTTGAATGATCCGTTCGATGAGG
AGTACCAGCGTATTGAAGAAAACCTCGATGCTGAGCGTGCTCATGGAGAG
CACCAGCGCGACGATCAGCAGGCTGAGCATTCGCAAAGTGAGCATAGTCC
CGCTTCCTCTCATGTGTCAGTACCTGCGTCTTATTCGGAAGAAAGTATGT
CGGTGCAGAGTGAACCCACGCAACGAGGCACTGAGTCGCATCCATTGCGT
CTATCATCTAGCGAGCGACGTCAATTGTCGCCATTTTCTATTCAATCGCG
TCAATTGTCTCCATTGTTTTTTCAGTCGCGTGAAGACCCTCCATCTGCTT
ATCCACTTCCCGTTCCGCACGAGGTTTCAATTATTCGCGATGCAGATGTC
TTGGCAAAGTTAGATATTGCAGCTCCAATCTCCGCCTCCAAGGATTCTGA
CGACGGCAAGTGCACGTTTTGTATTGAACCCGTTGTACCTGGTCAGAAAG
CTCGCACTACCCCGTGCAACCATCTGTTTCACGCCTCCTGTTTGGAGCAA
TGGGTATTGTATGTCACTGCCAACTTGATGAACGTGGCCGCGTATTGGCT
GAATCATGATGGATCCATTGAATTCAAGTCTCGCTTCCCATTTTGTCCGA
ACTGCGCTAAGTTTCTTGATGTCGTCCCCAGGCACGAATGGAGAGTGGTG
TTGCTCACGGCTCTGGCAGTCGCACTGTCTGTGGACAGCACAAATCAAGC
CGTGGCTCTGTATGAAAGGGATGTCGTTGTGGTGGATAGGTCTAGTCCAC
CGGTAACCATTCATATTGGGGCTGAAGAGTATGGTTTCAGGCCGCGCTGG
ATGGATGAGAATGAAAACTACCATTACACGTTTGTCGCTCGCAATGAAGG
TTGTAGGGTGTTGCTCAGGGTCCTTGCTTACCCTATTGTTTCAGCCAGTG
ATCCTGCCATAGACCAGGAAAGTTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:184047..185072+

>Ggra4631.t1 ID=Ggra4631.t1|Name=Ggra4631.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000941_pilon:184047..185072+ (Gracilaria gracilis GNS1m male)
ATGCGCGGCGTGCTCAACTTGTTGCTCTCCATTGCGGCTGGCGCCGCTAT
TGGAGTTCTCATCCCGCAGCTGCCTTTCTTGAATGATCCGTTCGATGAGG
AGTACCAGCGTATTGAAGAAAACCTCGATGCTGAGCGTGCTCATGGAGAG
CACCAGCGCGACGATCAGCAGGCTGAGCATTCGCAAAGTGAGCATAGTCC
CGCTTCCTCTCATGTGTCAGTACCTGCGTCTTATTCGGAAGAAAGTATGT
CGGTGCAGAGTGAACCCACGCAACGAGGCACTGAGTCGCATCCATTGCGT
CTATCATCTAGCGAGCGACGTCAATTGTCGCCATTTTCTATTCAATCGCG
TCAATTGTCTCCATTGTTTTTTCAGTCGCGTGAAGACCCTCCATCTGCTT
ATCCACTTCCCGTTCCGCACGAGGTTTCAATTATTCGCGATGCAGATGTC
TTGGCAAAGTTAGATATTGCAGCTCCAATCTCCGCCTCCAAGGATTCTGA
CGACGGCAAGTGCACGTTTTGTATTGAACCCGTTGTACCTGGTCAGAAAG
CTCGCACTACCCCGTGCAACCATCTGTTTCACGCCTCCTGTTTGGAGCAA
TGGGTATTGTATGTCACTGCCAACTTGATGAACGTGGCCGCGTATTGGCT
GAATCATGATGGATCCATTGAATTCAAGTCTCGCTTCCCATTTTGTCCGA
ACTGCGCTAAGTTTCTTGATGTCGTCCCCAGGCACGAATGGAGAGTGGTG
TTGCTCACGGCTCTGGCAGTCGCACTGTCTGTGGACAGCACAAATCAAGC
CGTGGCTCTGTATGAAAGGGATGTCGTTGTGGTGGATAGGTCTAGTCCAC
CGGTAACCATTCATATTGGGGCTGAAGAGTATGGTTTCAGGCCGCGCTGG
ATGGATGAGAATGAAAACTACCATTACACGTTTGTCGCTCGCAATGAAGG
TTGTAGGGTGTTGCTCAGGGTCCTTGCTTACCCTATTGTTTCAGCCAGTG
ATCCTGCCATAGACCAGGAAAGTTGA
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