Ggra4620.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4620.t1
Unique NameGgra4620.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Homology
The following BLAST results are available for this feature:
BLAST of Ggra4620.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 69..92
e-value: 0.075
score: 22.2
coord: 41..63
e-value: 0.034
score: 23.3
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 42..63
e-value: 1.3E-5
score: 25.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..63
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 71..92
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..68
score: 14.627462
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 69..97
score: 11.073551
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 66..94
e-value: 1.1E-9
score: 39.8
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 28..65
e-value: 1.2E-11
score: 46.2
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 42..105
NoneNo IPR availablePANTHERPTHR24390:SF140ZINC FINGER PROTEIN 763coord: 42..105
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 42..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:155848..156771 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1Ggra4620.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 155848..156771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MTESHGGDTTSFHREFAMILGNTTRQTFSSRTKAKKPRPRPVCKVCGRSF
SKPANLKAHERIHTGEKRYMCLICDRRFVWKSSLNFHSRTAHKERRNQTS
IAHTHPQTTPMKPLEFQPNNDLQSVSEEAEFIPKPLLGTRTCEYGDMTAQ
LQALVTNEPCIADLLNKNDVTDGSFGQLGAWEHGSITQIGTWGDEALALQ
DSVFDDFDIAPSWLPSIGTDACLSAPSAEQLLLDDSNHNLFNDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf