Ggra4620.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4620.t1
Unique NameGgra4620.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:155848..156771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4620Ggra4620Gracilaria gracilis GNS1m malegenetig00000941_pilon 155848..156771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1Ggra4620.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 155848..156771 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1.start1Ggra4620.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 155848..155850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1.CDS1Ggra4620.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 155848..156030 +
Ggra4620.t1.CDS2Ggra4620.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 156121..156168 +
Ggra4620.t1.CDS3Ggra4620.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000941_pilon 156268..156771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1.exon1Ggra4620.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 155848..156030 +
Ggra4620.t1.exon2Ggra4620.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 156121..156168 +
Ggra4620.t1.exon3Ggra4620.t1.exon3Gracilaria gracilis GNS1m maleexontig00000941_pilon 156268..156771 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1.intron1Ggra4620.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 156031..156120 +
Ggra4620.t1.intron2Ggra4620.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000941_pilon 156169..156267 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4620.t1.stop1Ggra4620.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 156769..156771 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MTESHGGDTTSFHREFAMILGNTTRQTFSSRTKAKKPRPRPVCKVCGRSF
SKPANLKAHERIHTGEKRYMCLICDRRFVWKSSLNFHSRTAHKERRNQTS
IAHTHPQTTPMKPLEFQPNNDLQSVSEEAEFIPKPLLGTRTCEYGDMTAQ
LQALVTNEPCIADLLNKNDVTDGSFGQLGAWEHGSITQIGTWGDEALALQ
DSVFDDFDIAPSWLPSIGTDACLSAPSAEQLLLDDSNHNLFNDF*
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spliced messenger RNA

>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000941_pilon:155848..156771+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAATCACATGGAGGAGATACGACCAGTTTCCATCGAGAGTTTGC
TATGATACTAGGAAACACTACACGACAGACCTTTTCTTCTCGCACGAAGG
CAAAGAAACCTCGTCCCCGACCAGTTTGTAAGGTCTGCGGAAGATCATTC
TCGAAGCCAGCCAATCTAAAGGCTCATGAAAGGATTCATACGGGAGAGAA
GAGATATATGTGCCTTATCTGCGATCGACGATTTGTCTGGAAGAGCAGTC
TTAACTTCCACAGCCGCACCGCTCACAAGGAAAGAAGAAATCAGACGTCT
ATTGCTCATACTCACCCCCAAACGACGCCCATGAAACCACTGGAATTTCA
ACCAAACAATGACCTACAATCGGTATCGGAGGAAGCGGAATTCATTCCGA
AGCCACTGCTAGGGACACGCACATGTGAATACGGGGACATGACAGCTCAG
CTCCAAGCGCTTGTCACGAATGAGCCTTGTATCGCTGACTTGCTCAACAA
GAATGACGTGACAGACGGATCTTTTGGCCAACTTGGAGCTTGGGAACATG
GCTCGATAACCCAGATCGGAACTTGGGGAGATGAAGCGCTGGCCTTGCAA
GACTCTGTGTTCGACGACTTTGATATTGCGCCTTCATGGTTACCAAGCAT
TGGAACTGATGCTTGTCTTTCAGCACCAAGCGCGGAGCAACTTTTGCTCG
ACGATAGTAACCACAACCTCTTTAATGACTTCTAG
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protein sequence of Ggra4620.t1

>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MTESHGGDTTSFHREFAMILGNTTRQTFSSRTKAKKPRPRPVCKVCGRSF
SKPANLKAHERIHTGEKRYMCLICDRRFVWKSSLNFHSRTAHKERRNQTS
IAHTHPQTTPMKPLEFQPNNDLQSVSEEAEFIPKPLLGTRTCEYGDMTAQ
LQALVTNEPCIADLLNKNDVTDGSFGQLGAWEHGSITQIGTWGDEALALQ
DSVFDDFDIAPSWLPSIGTDACLSAPSAEQLLLDDSNHNLFNDF*
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mRNA from alignment at tig00000941_pilon:155848..156771+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000941_pilon:155848..156771+ (Gracilaria gracilis GNS1m male)
ATGACTGAATCACATGGAGGAGATACGACCAGTTTCCATCGAGAGTTTGC
TATGATACTAGGAAACACTACACGACAGACCTTTTCTTCTCGCACGAAGG
CAAAGAAACCTCGTCCCCGACCAGTTTGTAAGGTCTGCGGAAGATCATTC
TCGAAGCCAGCCAATCTAAAGGCTCATGAAAGGGTTCGTGGCGTTTTCGT
TTCTAAGTGGACCTTACCGAAACACCGTTTTATTCGTTCACTGACAATCA
ACTCCATCTGGCCTTCAAAACAGATTCATACGGGAGAGAAGAGATATATG
TGCCTTATCTGCGATCGACGAGTAAGTTTCCAGAAGGTTAACAAAGAACA
GGGTAGTATCAAGACTGAAATCCTAACGATCTGCTTCGACATACAATTCC
ATCAACGTCATTTTTCTCAGTTTGTCTGGAAGAGCAGTCTTAACTTCCAC
AGCCGCACCGCTCACAAGGAAAGAAGAAATCAGACGTCTATTGCTCATAC
TCACCCCCAAACGACGCCCATGAAACCACTGGAATTTCAACCAAACAATG
ACCTACAATCGGTATCGGAGGAAGCGGAATTCATTCCGAAGCCACTGCTA
GGGACACGCACATGTGAATACGGGGACATGACAGCTCAGCTCCAAGCGCT
TGTCACGAATGAGCCTTGTATCGCTGACTTGCTCAACAAGAATGACGTGA
CAGACGGATCTTTTGGCCAACTTGGAGCTTGGGAACATGGCTCGATAACC
CAGATCGGAACTTGGGGAGATGAAGCGCTGGCCTTGCAAGACTCTGTGTT
CGACGACTTTGATATTGCGCCTTCATGGTTACCAAGCATTGGAACTGATG
CTTGTCTTTCAGCACCAAGCGCGGAGCAACTTTTGCTCGACGATAGTAAC
CACAACCTCTTTAATGACTTCTAG
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Coding sequence (CDS) from alignment at tig00000941_pilon:155848..156771+

>Ggra4620.t1 ID=Ggra4620.t1|Name=Ggra4620.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000941_pilon:155848..156771+ (Gracilaria gracilis GNS1m male)
ATGACTGAATCACATGGAGGAGATACGACCAGTTTCCATCGAGAGTTTGC
TATGATACTAGGAAACACTACACGACAGACCTTTTCTTCTCGCACGAAGG
CAAAGAAACCTCGTCCCCGACCAGTTTGTAAGGTCTGCGGAAGATCATTC
TCGAAGCCAGCCAATCTAAAGGCTCATGAAAGGATTCATACGGGAGAGAA
GAGATATATGTGCCTTATCTGCGATCGACGATTTGTCTGGAAGAGCAGTC
TTAACTTCCACAGCCGCACCGCTCACAAGGAAAGAAGAAATCAGACGTCT
ATTGCTCATACTCACCCCCAAACGACGCCCATGAAACCACTGGAATTTCA
ACCAAACAATGACCTACAATCGGTATCGGAGGAAGCGGAATTCATTCCGA
AGCCACTGCTAGGGACACGCACATGTGAATACGGGGACATGACAGCTCAG
CTCCAAGCGCTTGTCACGAATGAGCCTTGTATCGCTGACTTGCTCAACAA
GAATGACGTGACAGACGGATCTTTTGGCCAACTTGGAGCTTGGGAACATG
GCTCGATAACCCAGATCGGAACTTGGGGAGATGAAGCGCTGGCCTTGCAA
GACTCTGTGTTCGACGACTTTGATATTGCGCCTTCATGGTTACCAAGCAT
TGGAACTGATGCTTGTCTTTCAGCACCAAGCGCGGAGCAACTTTTGCTCG
ACGATAGTAACCACAACCTCTTTAATGACTTCTAG
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