Ggra4517.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4517.t2
Unique NameGgra4517.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length793
Homology
BLAST of Ggra4517.t2 vs. uniprot
Match: A0A2V3J3Z3 (NopRA1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3Z3_9FLOR)

HSP 1 Score: 731 bits (1888), Expect = 2.160e-239
Identity = 398/783 (50.83%), Postives = 529/783 (67.56%), Query Frame = 0
Query:    1 MAYVDDLKFTFDAAHFCQQITDAIGHGRYSTEAALKDPSALASASTALHKFLAQAKSEDAPDVIAAYLSYSTRAVELFNSLRTVTVDPSVASVAVECLTEIVRYSLKPDNPPDALEHVRSVVRSIVRTHAPLITDVLVHDKRACARKALELLRLTAMCHPLLAKELLNKYHLSSKRLASILCSKSNNYCRVPFLDLLFSVITCSKRDVHFSLSFNARELLIACLSTITQRTTEETNSTSPVRSQSASKSTNS-THMQQPALPGYIQKRELVASINFLLVLRKHLFDEMPRHVRRKTFAPPMCSMLAKIACTELPPLSVAPKQVQNDQRALRGIAGKLFIAFAREVDGYLLKQAGDALLATSLVNGSSRATTFTIKAIEVQPCLSSHLLDYGPFLSSDPQPSTKWLSFCSVLSASLMRISTLPSILSKHTFLEKCLSHSSPIVRHFGHLFTLSCCRIVQENKQYLENPDMYLPSVDFLKQSLRKEESGDALVHKLLAQYQLIFGEKVDKRKTILMNMAVVKSAGNVSEAEKSIRAGLLVAPEETVMMVMNHKLFSRLVMQACTSSDRRLSQRLWRLCADTLSHSFLFPPTTKYEVEVFLSVISGLGKEREVCISTLENMISTALANPYGLYDQLNTIVSLEDGSSPPISLFFIAALLRIRKLREAKK--PAQGMSKSEQQVFETFLIRIVGFILASIVVLNPNTERNSSIMIAVSRFVSADIFWWNSSNATADTQNE-QIAKACVCLRELYHNLGSYPETPFFALLSSLCSCFLIFLGTRGGIS 779
            M++VD  K TFDAA FC+ +  A GHGR STEAALKD ++L +ASTAL  FL   KS+  PDVIAAY+SYST A ELFN+LRTV +D S+ASVA++CL EI RYSL+ DNP  AL+  RSVVR + R+ A LIT+VLV D+R+CARKAL+LL+L A CH LLAKE+++ +  +S +L SILCS  NN CR PFLDL+ SV+TCSK+DVH  LS NAR LLI CLSTIT RT  E N+   V   +   S+N    +Q   LP Y+Q+REL A+I+F+  LRKHLF  +  H R KTFA P+C+MLA+IA T LPPL V+P QVQ++Q+ LR +A  LF   A+E DGYLLKQ  +ALLAT LV+G+S A   T+K +  QP LS+ +L+ GPFL S PQ STKWL++CS++S  L+R+        +H FLEKCL H+SP+VRH+G +FTLSCCR+V+++   + +P++YLPS+  LKQSLRKE  GD LV  LLAQYQL+F + ++KRKT+L+  A+  S  N+ EAE +IRA L VAP E V M  N K+FS+LV QA  S D  +S RLW LCAD L  SFLFPP+T+ EV+V+L V+S LG E +VC + LE M+S ALANPYGL+DQL+ + S   G +  ISL  + +L+R+RK++   K  P + ++K      E  L++I   +L+   VL    E+  S+   VS     ++ WW S     + Q E  +  A   +++      +   TP+  L++S+ S F+  L T   IS
Sbjct:    1 MSFVDPQKSTFDAADFCEILRTAFGHGRLSTEAALKDTTSLTAASTALSTFLTHTKSKHPPDVIAAYVSYSTGAPELFNALRTVAIDRSIASVALDCLIEITRYSLQSDNPVSALDSARSVVREVPRSKAHLITNVLVKDRRSCARKALQLLQLVAKCHSLLAKEIVHNFDFTSNQLVSILCSPHNNLCRAPFLDLVISVLTCSKQDVHLFLSSNARPLLITCLSTITTRTVNEANTAQNVGQDTEPHSSNDYPTLQFTPLPSYVQRRELRAAIDFIRALRKHLFLGLEGHARSKTFAAPLCTMLARIASTALPPLFVSPIQVQDEQKGLREVARVLFTLVAQEADGYLLKQVANALLATDLVHGNSEAVLLTMKVVGQQPRLSALILNMGPFLRSSPQLSTKWLAYCSIISFCLVRVKYPLKAFVEHGFLEKCLGHTSPMVRHYGVIFTLSCCRLVRKHSDAMAHPELYLPSITVLKQSLRKESKGDGLVQSLLAQYQLVFAQSMEKRKTVLIETAINASGNNMLEAESAIRAALSVAPREMVHMAFNQKIFSKLVSQAVQSRDIYVSSRLWELCADLLRSSFLFPPSTESEVDVYLFVLSSLGTEADVCAACLERMVSVALANPYGLFDQLSELSS-GSGEAATISLLSVTSLIRMRKMKVKDKAPPRKHLNKP----LEVVLLQIFSLLLSCSTVLGTAREKYESLFTIVSELAPFELKWWKSELTRHEVQQEGHLLAASSFIQKALKRSPTRYWTPYLQLMASVSSYFVQSLSTESKIS 778          
BLAST of Ggra4517.t2 vs. uniprot
Match: R7QQD7 (NopRA1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQD7_CHOCR)

HSP 1 Score: 404 bits (1039), Expect = 1.410e-118
Identity = 238/693 (34.34%), Postives = 395/693 (57.00%), Query Frame = 0
Query:    2 AYVDDLKFTFDAAHFCQQITDAIGHGRYSTEAALKDPSALASASTALHKFLAQAKSEDAPDVIAAYLSYSTRAVELFNSLRTVTVDPSVASVAVECLTEIVRYSLKPDNPPDALEHVRSVVRSIVRTHAPLITDVLVHDKRACARKALELLRLTAMCHPLLAKELLNKYHLSSKRLASILCSKSNNYCRVPFLDLLFSVITCSKRDVHFSLSFNARELLIACLSTITQRTTEET-----NSTSPVRSQSASKS---TNSTHMQQPALPGYIQKRELVASINFLLVLRKHLFDEMPRHVRRKTFAPPMCSMLAKIACTELPPLSVAPKQVQNDQRALRGIAGKLFIAFAREVDGYLLKQAGDALLATSLVNGSSRATTFTIKAIEVQPCLSSHLLDYGPFLSSDPQPSTKWLSFCSVLSASLMRISTLPSILSKHTFLEKCLSHSSPIVRHFGHLFTLSCCRIVQENKQYLENPDMYLPSVDFLKQSLRKEESGDALVHKLLAQYQLIFGEKVDKRKTILMNMAVVKSAGNVSEAEKSIRAGLLVAPEETVMMVMNHKLFSRLVMQACTSSDRRLSQRLWRLCADTLSHSFLFPPTTKYEVEVFLSVISGLGKEREVCISTLENMISTALANPYGLYDQLNTIVSLEDGSSPP----ISLFFIAALLRIRKLREAKKPAQGMSKSEQQVFETFL 682
            A+VDD++ +FDAAHFC+ ++  +G G+ ++  AL+D SA+++A+ ALH F   A S   PDV+AAY+ YS  A ELF +LR +TV+ ++ ++A++CL  IVRY+    NP    E  R+VV+ +V+T A L+ DVL HD+ ACA+KAL LL L A  HP+LAKE+LN++      L   LCS +NN+CRVPFL L++ ++     DV FSL+   R +L+ CL+ +T R  EE      + T PVR +   K    T     +   LP ++Q+ EL A+I+FL  L++HL        +R  FA P+  +LA+IA  ++PPL   P QV  + + LR +A +LF + A +     ++    AL    + NG +    F +  I+ QP ++  LL+ G ++   PQ S+ W +  +V+S  ++R+    +  +++ F  KCL+H  P++R+ G     + C+++Q ++  L  P+ +LPS+D ++  L+  +  D    KLL+ YQ +  +     K   + +++  +  ++  +E SIRA   V+P + +  ++    F++L+++A  +SD+  S RLWRL  D L H+ LFP  T+ EV++FLS++S          + LE +   A + P+ LYD L+ I   +D +  P     SLF +  + ++RKL      ++  +  ++  F +FL
Sbjct:   27 AFVDDVRASFDAAHFCRVVSAGVGIGKTTSGLALRDASAVSAATAALHNFHRDATSPSTPDVVAAYVQYSPAANELFTALRAITVNATLVALALDCLIAIVRYAHHLPNPAQTREAARAVVKEVVKTRAVLLRDVLAHDQPACAKKALVLLALVAQTHPVLAKEVLNRFKFVDDVLHEKLCSSANNFCRVPFLALVYHLLASGDFDVAFSLAHKNRPVLVNCLNVVTVRVVEEAYPQKPSKTDPVRDKGKKKKHIPTKKRVKKASVLPSHVQREELNAAIDFLTALQRHLLALSHVSTKRAAFAFPVLDLLAQIAAADIPPLEHVPHQVVPEHQRLRKLALELFQSVAMDSAVSYMRDVISALTNRVIANGIA-TVKFVLNVIDSQPQVAKGLLERGKYVRELPQLSSSWFATAAVISECVLRMPCAITKFAENGFFTKCLAHEDPLIRNTGITIMNAFCKVIQADRDALARPETFLPSLDRVQYHLKNHQDTDGGSQKLLSVYQELLCDDDGGTKADPVKLSLQMAGNDLEMSEHSIRAAFSVSPCDALSSILKKGYFAKLIIRATQTSDKAASTRLWRLSHDILMHTGLFPTGTENEVDIFLSLLSKQNTYLFESATALEKIAFMAWSMPFRLYDDLHNI---DDSTCRPNTSSTSLFTVRCIYQLRKLT----ASENRTTPQELHFRSFL 711          
BLAST of Ggra4517.t2 vs. uniprot
Match: A0A2V3ILW3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILW3_9FLOR)

HSP 1 Score: 155 bits (393), Expect = 5.540e-40
Identity = 80/154 (51.95%), Postives = 105/154 (68.18%), Query Frame = 0
Query:  617 MISTALANPYGLYDQLNTIVSLEDGSSPPISLFFIAALLRIRKLREAKKPAQGMSKSEQQVFETFLIRIVGFILASIVVLNPNTERNSSIMIAVSRFVSADIFWWNSSNATADTQNE-QIAKACVCLRELYHNLGSYPETPFFALLSSLCSCFL 769
            MISTAL +PYGLYD LN I S  + +S P+SLFF+A L RIRKL++AK    GMS+S   +F   L+RI GF+LAS  VL+ +T R  SI+  VS FVS   FWW+        Q+E Q AKAC+ L+ + +++G+YPET F  LL+S+CSCFL
Sbjct:    1 MISTALGSPYGLYDHLNMIASTRNAASTPVSLFFVATLRRIRKLQDAKNHMLGMSESGHNIFRAALVRIAGFVLASRYVLDHSTMRKCSIINTVSGFVSTVKFWWHPKGFIEHVQDEEQFAKACLYLKGMLYDVGTYPETLFLVLLASICSCFL 154          
The following BLAST results are available for this feature:
BLAST of Ggra4517.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J3Z32.160e-23950.83NopRA1 domain-containing protein n=1 Tax=Gracilari... [more]
R7QQD71.410e-11834.34NopRA1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A2V3ILW35.540e-4051.95Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..256
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 755..774
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 677..696
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 641..657
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..640
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 775..792
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 658..676
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 697..754

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:811718..814154 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2Ggra4517.t2Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 811718..814154 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=793bp
MAYVDDLKFTFDAAHFCQQITDAIGHGRYSTEAALKDPSALASASTALHK
FLAQAKSEDAPDVIAAYLSYSTRAVELFNSLRTVTVDPSVASVAVECLTE
IVRYSLKPDNPPDALEHVRSVVRSIVRTHAPLITDVLVHDKRACARKALE
LLRLTAMCHPLLAKELLNKYHLSSKRLASILCSKSNNYCRVPFLDLLFSV
ITCSKRDVHFSLSFNARELLIACLSTITQRTTEETNSTSPVRSQSASKST
NSTHMQQPALPGYIQKRELVASINFLLVLRKHLFDEMPRHVRRKTFAPPM
CSMLAKIACTELPPLSVAPKQVQNDQRALRGIAGKLFIAFAREVDGYLLK
QAGDALLATSLVNGSSRATTFTIKAIEVQPCLSSHLLDYGPFLSSDPQPS
TKWLSFCSVLSASLMRISTLPSILSKHTFLEKCLSHSSPIVRHFGHLFTL
SCCRIVQENKQYLENPDMYLPSVDFLKQSLRKEESGDALVHKLLAQYQLI
FGEKVDKRKTILMNMAVVKSAGNVSEAEKSIRAGLLVAPEETVMMVMNHK
LFSRLVMQACTSSDRRLSQRLWRLCADTLSHSFLFPPTTKYEVEVFLSVI
SGLGKEREVCISTLENMISTALANPYGLYDQLNTIVSLEDGSSPPISLFF
IAALLRIRKLREAKKPAQGMSKSEQQVFETFLIRIVGFILASIVVLNPNT
ERNSSIMIAVSRFVSADIFWWNSSNATADTQNEQIAKACVCLRELYHNLG
SYPETPFFALLSSLCSCFLIFLGTRGGISGVKKWAHITLGTP*
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