Ggra4517.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4517.t2
Unique NameGgra4517.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length793
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:811718..814154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4517Ggra4517Gracilaria gracilis GNS1m malegenetig00000898_pilon 808317..814154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2Ggra4517.t2Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 811718..814154 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2.stop1Ggra4517.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 811718..811720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2.CDS1Ggra4517.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 811718..811789 -
Ggra4517.t2.CDS2Ggra4517.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 811848..814154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2.exon1Ggra4517.t2.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 811718..811789 -
Ggra4517.t2.exon2Ggra4517.t2.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 811848..814154 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2.intron1Ggra4517.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 811790..811847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4517.t2.start1Ggra4517.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 814152..814154 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=793bp
MAYVDDLKFTFDAAHFCQQITDAIGHGRYSTEAALKDPSALASASTALHK
FLAQAKSEDAPDVIAAYLSYSTRAVELFNSLRTVTVDPSVASVAVECLTE
IVRYSLKPDNPPDALEHVRSVVRSIVRTHAPLITDVLVHDKRACARKALE
LLRLTAMCHPLLAKELLNKYHLSSKRLASILCSKSNNYCRVPFLDLLFSV
ITCSKRDVHFSLSFNARELLIACLSTITQRTTEETNSTSPVRSQSASKST
NSTHMQQPALPGYIQKRELVASINFLLVLRKHLFDEMPRHVRRKTFAPPM
CSMLAKIACTELPPLSVAPKQVQNDQRALRGIAGKLFIAFAREVDGYLLK
QAGDALLATSLVNGSSRATTFTIKAIEVQPCLSSHLLDYGPFLSSDPQPS
TKWLSFCSVLSASLMRISTLPSILSKHTFLEKCLSHSSPIVRHFGHLFTL
SCCRIVQENKQYLENPDMYLPSVDFLKQSLRKEESGDALVHKLLAQYQLI
FGEKVDKRKTILMNMAVVKSAGNVSEAEKSIRAGLLVAPEETVMMVMNHK
LFSRLVMQACTSSDRRLSQRLWRLCADTLSHSFLFPPTTKYEVEVFLSVI
SGLGKEREVCISTLENMISTALANPYGLYDQLNTIVSLEDGSSPPISLFF
IAALLRIRKLREAKKPAQGMSKSEQQVFETFLIRIVGFILASIVVLNPNT
ERNSSIMIAVSRFVSADIFWWNSSNATADTQNEQIAKACVCLRELYHNLG
SYPETPFFALLSSLCSCFLIFLGTRGGISGVKKWAHITLGTP*
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spliced messenger RNA

>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2379bp|location=Sequence derived from alignment at tig00000898_pilon:811718..814154- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACGTCGACGATCTCAAGTTTACGTTCGACGCCGCCCACTTTTG
TCAGCAGATAACCGACGCCATCGGGCACGGCCGATATTCAACAGAGGCTG
CCTTGAAGGATCCCTCCGCGCTTGCGTCTGCCTCAACCGCTCTTCACAAG
TTCCTTGCGCAGGCCAAGTCTGAAGATGCACCCGATGTCATCGCCGCCTA
CCTCTCATACAGCACTCGCGCCGTGGAGCTTTTCAATTCGCTGCGAACTG
TCACCGTCGATCCCTCCGTCGCTTCCGTTGCCGTTGAATGTCTCACTGAG
ATCGTTCGCTACTCCTTAAAACCTGACAATCCTCCCGACGCTCTCGAGCA
CGTCAGATCTGTTGTGCGCAGTATCGTCAGAACGCATGCTCCCCTCATTA
CCGATGTGCTTGTGCACGATAAACGAGCATGCGCGAGAAAGGCACTTGAG
TTGCTGCGATTGACCGCTATGTGTCACCCTCTTCTGGCCAAGGAACTGCT
CAACAAGTACCACTTATCATCCAAGCGTCTGGCTTCCATTCTATGCTCCA
AGAGCAATAATTACTGCAGAGTGCCGTTTCTGGATCTTCTGTTTTCCGTA
ATCACGTGTTCGAAGCGAGATGTACATTTTTCTCTTTCGTTCAACGCCAG
GGAGTTGCTTATAGCGTGTTTAAGCACCATCACGCAGCGAACCACGGAAG
AGACAAACTCAACGTCCCCTGTACGCTCACAATCTGCTTCAAAATCAACT
AACTCTACCCACATGCAACAGCCAGCGCTGCCTGGCTATATTCAGAAAAG
GGAACTTGTTGCGTCCATCAACTTTCTTCTGGTACTTCGAAAGCATCTTT
TCGATGAGATGCCAAGGCACGTGCGACGCAAAACGTTTGCTCCCCCGATG
TGTTCCATGTTGGCTAAAATTGCTTGCACAGAACTACCGCCATTATCCGT
TGCGCCGAAACAGGTTCAGAATGACCAGAGAGCGCTCCGGGGTATTGCTG
GAAAGTTATTCATTGCTTTTGCCAGAGAGGTTGATGGTTATTTATTGAAA
CAAGCCGGAGATGCTTTGCTTGCCACATCGCTTGTCAATGGCTCTTCGAG
AGCCACTACCTTCACCATAAAGGCTATTGAAGTGCAACCATGTTTATCCA
GTCATCTCCTGGATTACGGTCCCTTTCTTTCTTCAGACCCTCAGCCTTCC
ACCAAATGGCTTTCGTTTTGTTCAGTATTATCCGCAAGTTTGATGAGAAT
CAGCACTCTTCCGTCCATATTATCCAAGCACACATTTCTTGAGAAGTGTT
TAAGCCACAGCTCTCCGATTGTTCGACATTTTGGACATCTCTTCACCCTG
TCATGCTGTCGTATCGTTCAGGAGAATAAGCAGTACCTGGAGAATCCTGA
TATGTACTTGCCATCCGTAGATTTCCTGAAACAGAGTCTTCGAAAAGAGG
AGTCTGGGGATGCTTTAGTGCACAAACTTCTTGCTCAGTATCAATTGATT
TTCGGGGAGAAAGTTGACAAGCGGAAAACGATCTTGATGAACATGGCAGT
GGTGAAGAGTGCCGGCAACGTCTCGGAGGCAGAGAAGTCAATAAGGGCTG
GACTTCTGGTGGCTCCAGAAGAAACAGTCATGATGGTTATGAACCACAAG
CTCTTCTCTCGCTTGGTCATGCAAGCATGTACTTCGAGTGACCGACGCCT
TTCTCAAAGATTGTGGCGTCTTTGCGCCGATACACTGAGCCATTCCTTTT
TATTTCCTCCAACTACAAAATACGAGGTTGAGGTCTTTTTGTCAGTCATA
TCTGGCCTTGGAAAGGAAAGAGAAGTTTGCATCAGTACCCTTGAGAACAT
GATTTCTACGGCCCTGGCCAATCCTTATGGTCTCTATGACCAATTGAATA
CCATCGTGTCCCTTGAAGACGGTAGTTCTCCTCCTATTTCTTTGTTTTTC
ATCGCTGCGTTACTCCGTATTCGGAAACTCAGAGAGGCTAAGAAGCCCGC
CCAAGGAATGTCGAAATCAGAGCAACAGGTCTTCGAAACCTTTCTCATTC
GTATTGTCGGATTCATTCTTGCATCTATTGTTGTTCTGAACCCCAATACC
GAGAGAAACTCTTCGATAATGATTGCTGTCTCTCGGTTTGTTTCAGCAGA
TATCTTTTGGTGGAATTCTAGCAATGCTACCGCAGATACCCAAAACGAGC
AAATTGCCAAGGCCTGCGTATGCCTCCGAGAATTGTACCATAATCTTGGG
AGTTATCCAGAAACACCCTTTTTCGCGCTATTGTCGTCGCTATGTTCATG
CTTTCTGATCTTTCTTGGGACTCGTGGCGGGATTTCAGGAGTGAAGAAGT
GGGCTCATATCACGTTGGGGACTCCTTAA
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protein sequence of Ggra4517.t2

>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=793bp
MAYVDDLKFTFDAAHFCQQITDAIGHGRYSTEAALKDPSALASASTALHK
FLAQAKSEDAPDVIAAYLSYSTRAVELFNSLRTVTVDPSVASVAVECLTE
IVRYSLKPDNPPDALEHVRSVVRSIVRTHAPLITDVLVHDKRACARKALE
LLRLTAMCHPLLAKELLNKYHLSSKRLASILCSKSNNYCRVPFLDLLFSV
ITCSKRDVHFSLSFNARELLIACLSTITQRTTEETNSTSPVRSQSASKST
NSTHMQQPALPGYIQKRELVASINFLLVLRKHLFDEMPRHVRRKTFAPPM
CSMLAKIACTELPPLSVAPKQVQNDQRALRGIAGKLFIAFAREVDGYLLK
QAGDALLATSLVNGSSRATTFTIKAIEVQPCLSSHLLDYGPFLSSDPQPS
TKWLSFCSVLSASLMRISTLPSILSKHTFLEKCLSHSSPIVRHFGHLFTL
SCCRIVQENKQYLENPDMYLPSVDFLKQSLRKEESGDALVHKLLAQYQLI
FGEKVDKRKTILMNMAVVKSAGNVSEAEKSIRAGLLVAPEETVMMVMNHK
LFSRLVMQACTSSDRRLSQRLWRLCADTLSHSFLFPPTTKYEVEVFLSVI
SGLGKEREVCISTLENMISTALANPYGLYDQLNTIVSLEDGSSPPISLFF
IAALLRIRKLREAKKPAQGMSKSEQQVFETFLIRIVGFILASIVVLNPNT
ERNSSIMIAVSRFVSADIFWWNSSNATADTQNEQIAKACVCLRELYHNLG
SYPETPFFALLSSLCSCFLIFLGTRGGISGVKKWAHITLGTP*
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mRNA from alignment at tig00000898_pilon:811718..814154-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2437bp|location=Sequence derived from alignment at tig00000898_pilon:811718..814154- (Gracilaria gracilis GNS1m male)
ATGGCGTACGTCGACGATCTCAAGTTTACGTTCGACGCCGCCCACTTTTG
TCAGCAGATAACCGACGCCATCGGGCACGGCCGATATTCAACAGAGGCTG
CCTTGAAGGATCCCTCCGCGCTTGCGTCTGCCTCAACCGCTCTTCACAAG
TTCCTTGCGCAGGCCAAGTCTGAAGATGCACCCGATGTCATCGCCGCCTA
CCTCTCATACAGCACTCGCGCCGTGGAGCTTTTCAATTCGCTGCGAACTG
TCACCGTCGATCCCTCCGTCGCTTCCGTTGCCGTTGAATGTCTCACTGAG
ATCGTTCGCTACTCCTTAAAACCTGACAATCCTCCCGACGCTCTCGAGCA
CGTCAGATCTGTTGTGCGCAGTATCGTCAGAACGCATGCTCCCCTCATTA
CCGATGTGCTTGTGCACGATAAACGAGCATGCGCGAGAAAGGCACTTGAG
TTGCTGCGATTGACCGCTATGTGTCACCCTCTTCTGGCCAAGGAACTGCT
CAACAAGTACCACTTATCATCCAAGCGTCTGGCTTCCATTCTATGCTCCA
AGAGCAATAATTACTGCAGAGTGCCGTTTCTGGATCTTCTGTTTTCCGTA
ATCACGTGTTCGAAGCGAGATGTACATTTTTCTCTTTCGTTCAACGCCAG
GGAGTTGCTTATAGCGTGTTTAAGCACCATCACGCAGCGAACCACGGAAG
AGACAAACTCAACGTCCCCTGTACGCTCACAATCTGCTTCAAAATCAACT
AACTCTACCCACATGCAACAGCCAGCGCTGCCTGGCTATATTCAGAAAAG
GGAACTTGTTGCGTCCATCAACTTTCTTCTGGTACTTCGAAAGCATCTTT
TCGATGAGATGCCAAGGCACGTGCGACGCAAAACGTTTGCTCCCCCGATG
TGTTCCATGTTGGCTAAAATTGCTTGCACAGAACTACCGCCATTATCCGT
TGCGCCGAAACAGGTTCAGAATGACCAGAGAGCGCTCCGGGGTATTGCTG
GAAAGTTATTCATTGCTTTTGCCAGAGAGGTTGATGGTTATTTATTGAAA
CAAGCCGGAGATGCTTTGCTTGCCACATCGCTTGTCAATGGCTCTTCGAG
AGCCACTACCTTCACCATAAAGGCTATTGAAGTGCAACCATGTTTATCCA
GTCATCTCCTGGATTACGGTCCCTTTCTTTCTTCAGACCCTCAGCCTTCC
ACCAAATGGCTTTCGTTTTGTTCAGTATTATCCGCAAGTTTGATGAGAAT
CAGCACTCTTCCGTCCATATTATCCAAGCACACATTTCTTGAGAAGTGTT
TAAGCCACAGCTCTCCGATTGTTCGACATTTTGGACATCTCTTCACCCTG
TCATGCTGTCGTATCGTTCAGGAGAATAAGCAGTACCTGGAGAATCCTGA
TATGTACTTGCCATCCGTAGATTTCCTGAAACAGAGTCTTCGAAAAGAGG
AGTCTGGGGATGCTTTAGTGCACAAACTTCTTGCTCAGTATCAATTGATT
TTCGGGGAGAAAGTTGACAAGCGGAAAACGATCTTGATGAACATGGCAGT
GGTGAAGAGTGCCGGCAACGTCTCGGAGGCAGAGAAGTCAATAAGGGCTG
GACTTCTGGTGGCTCCAGAAGAAACAGTCATGATGGTTATGAACCACAAG
CTCTTCTCTCGCTTGGTCATGCAAGCATGTACTTCGAGTGACCGACGCCT
TTCTCAAAGATTGTGGCGTCTTTGCGCCGATACACTGAGCCATTCCTTTT
TATTTCCTCCAACTACAAAATACGAGGTTGAGGTCTTTTTGTCAGTCATA
TCTGGCCTTGGAAAGGAAAGAGAAGTTTGCATCAGTACCCTTGAGAACAT
GATTTCTACGGCCCTGGCCAATCCTTATGGTCTCTATGACCAATTGAATA
CCATCGTGTCCCTTGAAGACGGTAGTTCTCCTCCTATTTCTTTGTTTTTC
ATCGCTGCGTTACTCCGTATTCGGAAACTCAGAGAGGCTAAGAAGCCCGC
CCAAGGAATGTCGAAATCAGAGCAACAGGTCTTCGAAACCTTTCTCATTC
GTATTGTCGGATTCATTCTTGCATCTATTGTTGTTCTGAACCCCAATACC
GAGAGAAACTCTTCGATAATGATTGCTGTCTCTCGGTTTGTTTCAGCAGA
TATCTTTTGGTGGAATTCTAGCAATGCTACCGCAGATACCCAAAACGAGC
AAATTGCCAAGGCCTGCGTATGCCTCCGAGAATTGTACCATAATCTTGGG
AGTTATCCAGAAACACCCTTTTTCGCGCTATTGTCGTCGCTATGTTCATG
CTTTCTGGTAAGTTCTTCTAATGAACATCAGGATAAAGGAACTCTCGCTC
AGATACGATGTATAGATCTTTCTTGGGACTCGTGGCGGGATTTCAGGAGT
GAAGAAGTGGGCTCATATCACGTTGGGGACTCCTTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:811718..814154-

>Ggra4517.t2 ID=Ggra4517.t2|Name=Ggra4517.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2379bp|location=Sequence derived from alignment at tig00000898_pilon:811718..814154- (Gracilaria gracilis GNS1m male)
ATGGCGTACGTCGACGATCTCAAGTTTACGTTCGACGCCGCCCACTTTTG
TCAGCAGATAACCGACGCCATCGGGCACGGCCGATATTCAACAGAGGCTG
CCTTGAAGGATCCCTCCGCGCTTGCGTCTGCCTCAACCGCTCTTCACAAG
TTCCTTGCGCAGGCCAAGTCTGAAGATGCACCCGATGTCATCGCCGCCTA
CCTCTCATACAGCACTCGCGCCGTGGAGCTTTTCAATTCGCTGCGAACTG
TCACCGTCGATCCCTCCGTCGCTTCCGTTGCCGTTGAATGTCTCACTGAG
ATCGTTCGCTACTCCTTAAAACCTGACAATCCTCCCGACGCTCTCGAGCA
CGTCAGATCTGTTGTGCGCAGTATCGTCAGAACGCATGCTCCCCTCATTA
CCGATGTGCTTGTGCACGATAAACGAGCATGCGCGAGAAAGGCACTTGAG
TTGCTGCGATTGACCGCTATGTGTCACCCTCTTCTGGCCAAGGAACTGCT
CAACAAGTACCACTTATCATCCAAGCGTCTGGCTTCCATTCTATGCTCCA
AGAGCAATAATTACTGCAGAGTGCCGTTTCTGGATCTTCTGTTTTCCGTA
ATCACGTGTTCGAAGCGAGATGTACATTTTTCTCTTTCGTTCAACGCCAG
GGAGTTGCTTATAGCGTGTTTAAGCACCATCACGCAGCGAACCACGGAAG
AGACAAACTCAACGTCCCCTGTACGCTCACAATCTGCTTCAAAATCAACT
AACTCTACCCACATGCAACAGCCAGCGCTGCCTGGCTATATTCAGAAAAG
GGAACTTGTTGCGTCCATCAACTTTCTTCTGGTACTTCGAAAGCATCTTT
TCGATGAGATGCCAAGGCACGTGCGACGCAAAACGTTTGCTCCCCCGATG
TGTTCCATGTTGGCTAAAATTGCTTGCACAGAACTACCGCCATTATCCGT
TGCGCCGAAACAGGTTCAGAATGACCAGAGAGCGCTCCGGGGTATTGCTG
GAAAGTTATTCATTGCTTTTGCCAGAGAGGTTGATGGTTATTTATTGAAA
CAAGCCGGAGATGCTTTGCTTGCCACATCGCTTGTCAATGGCTCTTCGAG
AGCCACTACCTTCACCATAAAGGCTATTGAAGTGCAACCATGTTTATCCA
GTCATCTCCTGGATTACGGTCCCTTTCTTTCTTCAGACCCTCAGCCTTCC
ACCAAATGGCTTTCGTTTTGTTCAGTATTATCCGCAAGTTTGATGAGAAT
CAGCACTCTTCCGTCCATATTATCCAAGCACACATTTCTTGAGAAGTGTT
TAAGCCACAGCTCTCCGATTGTTCGACATTTTGGACATCTCTTCACCCTG
TCATGCTGTCGTATCGTTCAGGAGAATAAGCAGTACCTGGAGAATCCTGA
TATGTACTTGCCATCCGTAGATTTCCTGAAACAGAGTCTTCGAAAAGAGG
AGTCTGGGGATGCTTTAGTGCACAAACTTCTTGCTCAGTATCAATTGATT
TTCGGGGAGAAAGTTGACAAGCGGAAAACGATCTTGATGAACATGGCAGT
GGTGAAGAGTGCCGGCAACGTCTCGGAGGCAGAGAAGTCAATAAGGGCTG
GACTTCTGGTGGCTCCAGAAGAAACAGTCATGATGGTTATGAACCACAAG
CTCTTCTCTCGCTTGGTCATGCAAGCATGTACTTCGAGTGACCGACGCCT
TTCTCAAAGATTGTGGCGTCTTTGCGCCGATACACTGAGCCATTCCTTTT
TATTTCCTCCAACTACAAAATACGAGGTTGAGGTCTTTTTGTCAGTCATA
TCTGGCCTTGGAAAGGAAAGAGAAGTTTGCATCAGTACCCTTGAGAACAT
GATTTCTACGGCCCTGGCCAATCCTTATGGTCTCTATGACCAATTGAATA
CCATCGTGTCCCTTGAAGACGGTAGTTCTCCTCCTATTTCTTTGTTTTTC
ATCGCTGCGTTACTCCGTATTCGGAAACTCAGAGAGGCTAAGAAGCCCGC
CCAAGGAATGTCGAAATCAGAGCAACAGGTCTTCGAAACCTTTCTCATTC
GTATTGTCGGATTCATTCTTGCATCTATTGTTGTTCTGAACCCCAATACC
GAGAGAAACTCTTCGATAATGATTGCTGTCTCTCGGTTTGTTTCAGCAGA
TATCTTTTGGTGGAATTCTAGCAATGCTACCGCAGATACCCAAAACGAGC
AAATTGCCAAGGCCTGCGTATGCCTCCGAGAATTGTACCATAATCTTGGG
AGTTATCCAGAAACACCCTTTTTCGCGCTATTGTCGTCGCTATGTTCATG
CTTTCTGATCTTTCTTGGGACTCGTGGCGGGATTTCAGGAGTGAAGAAGT
GGGCTCATATCACGTTGGGGACTCCTTAA
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