Ggra4358.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4358.t1
Unique NameGgra4358.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length183
Homology
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A2V3IQY4 (50S ribosomal protein L5, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQY4_9FLOR)

HSP 1 Score: 341 bits (875), Expect = 2.260e-118
Identity = 171/182 (93.96%), Postives = 177/182 (97.25%), Query Frame = 0
Query:    1 MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            MV+GQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKI+THVTIRGPKAEEILERALKVKEYELR+ NFS GG +AR AGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAP RIGKLQTVTK+DAIKWFQTKHEGIV+
Sbjct:    1 MVSGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKIATHVTIRGPKAEEILERALKVKEYELRDGNFSSGGNSARGAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPARIGKLQTVTKEDAIKWFQTKHEGIVV 182          
BLAST of Ggra4358.t1 vs. uniprot
Match: R7QN89 (50S ribosomal protein L5, chloroplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN89_CHOCR)

HSP 1 Score: 286 bits (731), Expect = 2.140e-96
Identity = 143/179 (79.89%), Postives = 157/179 (87.71%), Query Frame = 0
Query:    4 GQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
             ++N+AN MRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQ PV+SKSRLTIRTFGIRRNEKI+THVT+RGPKAEEILER LKVKE+EL+E NFS GG            INEHIDLGLKYDPTTGIYGMD Y+VLKRAG+RVSKRRRAP  IGK QTV+KDDAIKWFQTK++G+VL
Sbjct:    6 AKKNSANVMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQTPVFSKSRLTIRTFGIRRNEKIATHVTVRGPKAEEILERGLKVKEFELKERNFSGGGXXXXXXXXXXXXINEHIDLGLKYDPTTGIYGMDFYIVLKRAGNRVSKRRRAPSSIGKFQTVSKDDAIKWFQTKYDGLVL 184          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A5J4Z700 (50S ribosomal protein L5, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z700_PORPP)

HSP 1 Score: 275 bits (703), Expect = 3.000e-92
Identity = 140/181 (77.35%), Postives = 155/181 (85.64%), Query Frame = 0
Query:    1 MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIV 181
            MVAG +N +NPMRELKVHKLVLN CVGESGDRLTRA RVLEQLTGQQPV+SKSRLTIRTFGIRRNEKIS HVT+RG KA+EILER LKVKEYEL+  NFSD G+       FGFGI EHIDLG+KYDP+TGIYGMD YVVLKRAG RV++RRRA  R+GK Q V+KDDAIKWF  K+EGI+
Sbjct:    1 MVAGGKNPSNPMRELKVHKLVLNCCVGESGDRLTRAARVLEQLTGQQPVFSKSRLTIRTFGIRRNEKISAHVTVRGDKADEILERGLKVKEYELKAGNFSDTGS-------FGFGITEHIDLGIKYDPSTGIYGMDFYVVLKRAGARVAQRRRAKGRVGKNQKVSKDDAIKWFVDKYEGII 174          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A7S1TEB6 (50S ribosomal protein L5, chloroplastic n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEB6_9RHOD)

HSP 1 Score: 275 bits (703), Expect = 2.150e-91
Identity = 141/182 (77.47%), Postives = 154/182 (84.62%), Query Frame = 0
Query:    1 MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            M +G+ N  N MRELKVHKLVLN CVGE GDRLTRAGRVLEQLTGQ PV+SKSRLTIRTFGIRRN+KI+T VT+RG KAEEILER LKVKE+ELR  NFSD        G FGFGINEHIDLG+KYDPTTGIYGMD YVVLKRAG R++KRRRA  RIGK QTV+K+DAIKWFQ K+EGIVL
Sbjct:   59 MGSGKNNLGNKMRELKVHKLVLNCCVGEPGDRLTRAGRVLEQLTGQTPVFSKSRLTIRTFGIRRNDKIATSVTVRGHKAEEILERGLKVKEFELRNRNFSD-------TGNFGFGINEHIDLGIKYDPTTGIYGMDFYVVLKRAGSRIAKRRRAKGRIGKYQTVSKEDAIKWFQQKYEGIVL 233          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A7S0ZK70 (50S ribosomal protein L5, chloroplastic (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK70_9RHOD)

HSP 1 Score: 266 bits (681), Expect = 6.730e-89
Identity = 135/176 (76.70%), Postives = 150/176 (85.23%), Query Frame = 0
Query:    1 MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTK 176
            MV+G++N  NPMRELKV KLVLN CVGESGDRLTRA RVLEQLTGQQP++SKSRLTIRTFGIRRNEKISTHVT+RG KAEEILER LKVKEYEL   NFSD G+       FGFGINEHIDLG+KYDP+TGIYGMD YVVLKR G RVS+R+R   R+GK Q+V+K+DAIKWFQ K
Sbjct:    8 MVSGKKNLGNPMRELKVDKLVLNCCVGESGDRLTRASRVLEQLTGQQPIFSKSRLTIRTFGIRRNEKISTHVTVRGDKAEEILERGLKVKEYELYGRNFSDTGS-------FGFGINEHIDLGIKYDPSTGIYGMDFYVVLKRPGARVSRRKRCKSRVGKYQSVSKEDAIKWFQQK 176          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A1X6NJA3 (50S ribosomal protein L5, chloroplastic n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJA3_PORUM)

HSP 1 Score: 265 bits (678), Expect = 1.320e-88
Identity = 133/171 (77.78%), Postives = 149/171 (87.13%), Query Frame = 0
Query:   12 MRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            MRELKVHKLVLN CVGESGDRLTRA RVLEQLTGQ PV+SKSRLTIRTFG+RRNEKISTHVT+RG KAEEILER LKVKEYEL+  NFS+        G FGFGINEHIDLGLKYDPTTGIYGMD Y+VLKRAG RV+KRRR    IGK+Q+V+KDD++KWFQ+K++GI+L
Sbjct:    1 MRELKVHKLVLNCCVGESGDRLTRAARVLEQLTGQTPVFSKSRLTIRTFGVRRNEKISTHVTVRGDKAEEILERGLKVKEYELQSRNFSN-------TGNFGFGINEHIDLGLKYDPTTGIYGMDFYIVLKRAGTRVAKRRRCKSTIGKVQSVSKDDSMKWFQSKYDGIIL 164          
BLAST of Ggra4358.t1 vs. uniprot
Match: RL11 (60S ribosomal protein L11 n=13 Tax=Sordariomycetes TaxID=147550 RepID=RL11_NEUCR)

HSP 1 Score: 245 bits (626), Expect = 1.490e-80
Identity = 119/180 (66.11%), Postives = 145/180 (80.56%), Query Frame = 0
Query:    2 VAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIV 181
            ++ ++ A NPMREL++ KLVLNICVGESGDRLTRA +VLEQL+GQ PVYSK+R T+RTFGIRRNEKIS HVT+RGPKAEEILER LKVKEYELR+ NFS+        G FGFGI+EHIDLG+KYDP  GIYGMD Y  + R G+RVS+RRRA  R+G    +T+DD +KWF+++ + IV
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSE-------TGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERVSRRRRAKSRVGATHRITRDDTVKWFKSRFDAIV 173          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A3P6TQ52 (Uncharacterized protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6TQ52_LITSI)

HSP 1 Score: 248 bits (634), Expect = 2.300e-80
Identity = 123/178 (69.10%), Postives = 144/178 (80.90%), Query Frame = 0
Query:    5 QRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            ++ AANPMRELK+ KL LNICVGESGDRLTRA +VLEQLTGQ PV+SK+R T+R+FGIRRNEKI+ H T+RGPKAEEI+ER LKVKEYEL   NFSD        G FGFGI EHIDLG+KYDP  GIYGMD YVVL RAG RV+KRRRA  R+G+   V K++A+KWFQ K++GI+L
Sbjct:   89 EKKAANPMRELKIEKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGPKAEEIIERGLKVKEYELYRENFSD-------TGNFGFGIQEHIDLGIKYDPLIGIYGMDFYVVLGRAGHRVAKRRRARGRVGRTHRVGKEEAVKWFQQKYDGIIL 259          
BLAST of Ggra4358.t1 vs. uniprot
Match: A0A0B2V082 (60S ribosomal protein L11 n=20 Tax=Spirurina TaxID=6274 RepID=A0A0B2V082_TOXCA)

HSP 1 Score: 245 bits (626), Expect = 4.060e-80
Identity = 121/178 (67.98%), Postives = 145/178 (81.46%), Query Frame = 0
Query:    5 QRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            ++ AANPMRELK+ KL LNICVGESGDRLTRA +VLEQLTGQ PV+SK+R T+R+FGIRRNEKI+ H T+RGPKAEEI+ER LKVKEYEL   NFS+       +G FGFGI EHIDLG+KYDP+ GIYGMD YVVL RAG RV+KRRRA  R+G    V K++++KWFQ K++GI+L
Sbjct:   21 EKKAANPMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGPKAEEIIERGLKVKEYELYRENFSN-------SGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRVAKRRRARGRVGHSHRVEKEESVKWFQQKYDGIIL 191          
BLAST of Ggra4358.t1 vs. uniprot
Match: RL112 (60S ribosomal protein L11-2 n=13 Tax=cellular organisms TaxID=131567 RepID=RL112_CAEEL)

HSP 1 Score: 245 bits (625), Expect = 4.420e-80
Identity = 120/178 (67.42%), Postives = 144/178 (80.90%), Query Frame = 0
Query:    5 QRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVYSKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFSDGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSKRRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL 182
            ++ A N MRELK+ KL LNICVGESGDRLTRA +VLEQLTGQ PV+SK+R T+RTFGIRRNEKI+ H T+RGPKAEEILE+ LKVKEYEL + NFSD        G FGFG+ EHIDLG+KYDP+ GIYGMD YVVL RAG R++KRRRAP R+G    V ++++IKWFQ K++GI+L
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSD-------TGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182          
The following BLAST results are available for this feature:
BLAST of Ggra4358.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQY42.260e-11893.9650S ribosomal protein L5, chloroplastic n=1 Tax=Gr... [more]
R7QN892.140e-9679.8950S ribosomal protein L5, chloroplastic n=1 Tax=Ch... [more]
A0A5J4Z7003.000e-9277.3550S ribosomal protein L5, chloroplastic n=1 Tax=Po... [more]
A0A7S1TEB62.150e-9177.4750S ribosomal protein L5, chloroplastic n=1 Tax=Co... [more]
A0A7S0ZK706.730e-8976.7050S ribosomal protein L5, chloroplastic (Fragment)... [more]
A0A1X6NJA31.320e-8877.7850S ribosomal protein L5, chloroplastic n=1 Tax=Po... [more]
RL111.490e-8066.1160S ribosomal protein L11 n=13 Tax=Sordariomycetes... [more]
A0A3P6TQ522.300e-8069.10Uncharacterized protein n=1 Tax=Litomosoides sigmo... [more]
A0A0B2V0824.060e-8067.9860S ribosomal protein L11 n=20 Tax=Spirurina TaxID... [more]
RL1124.420e-8067.4260S ribosomal protein L11-2 n=13 Tax=cellular orga... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031310Ribosomal protein L5, N-terminalPFAMPF00281Ribosomal_L5coord: 10..63
e-value: 1.4E-19
score: 70.2
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 1..182
e-value: 4.7E-62
score: 210.7
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 10..181
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 67..172
e-value: 1.5E-17
score: 63.6
IPR002132Ribosomal protein L5PIRSFPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..179
e-value: 3.4E-38
score: 128.9
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 7..182
NoneNo IPR availablePANTHERPTHR11994:SF1760S RIBOSOMAL PROTEIN L11-1coord: 7..182
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 40..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:37226..37774 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1Ggra4358.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 37226..37774 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVY
SKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFS
DGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSK
RRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031310Ribosomal_L5_N
IPR022803Ribosomal_L5_dom_sf
IPR031309Ribosomal_L5_C
IPR002132Ribosomal_L5
IPR020929Ribosomal_L5_CS