Ggra4358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4358.t1
Unique NameGgra4358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:37226..37774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EFO25175.1
Preferred nameRPL11
PFAMsRibosomal_L5,Ribosomal_L5_C
Max annot lvl33208|Metazoa
KEGG koko:K02868,ko:K10523
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue9.11e-82
EggNOG OGsCOG0094@1|root,KOG0397@2759|Eukaryota,38BMT@33154|Opisthokonta,3BDSE@33208|Metazoa,3CXGD@33213|Bilateria,40CDW@6231|Nematoda,1KUJX@119089|Chromadorea
DescriptionComponent of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4358Ggra4358Gracilaria gracilis GNS1m malegenetig00000898_pilon 37226..37774 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1.stop1Ggra4358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 37226..37228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1.CDS1Ggra4358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 37226..37774 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1.exon1Ggra4358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 37226..37774 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1.start1Ggra4358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 37772..37774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4358.t1Ggra4358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 37226..37774 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=183bp
MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVY
SKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFS
DGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSK
RRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL*
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spliced messenger RNA

>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000898_pilon:37226..37774- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGGGTCAGAGAAATGCTGCGAATCCGATGCGGGAGCTCAAAGT
CCACAAGCTTGTGCTCAACATTTGTGTTGGGGAATCTGGTGATAGGCTGA
CCAGGGCCGGGAGAGTGCTCGAGCAGCTCACCGGCCAACAGCCGGTGTAC
TCCAAGTCAAGGCTGACGATTCGTACTTTCGGAATCCGTCGTAATGAGAA
GATCTCTACCCATGTCACTATTCGTGGACCGAAGGCTGAAGAGATCTTGG
AACGCGCGCTCAAGGTCAAGGAATACGAGCTCCGTGAAGCTAACTTCAGC
GATGGTGGTGCTACTGCTCGTGCGGCTGGTGGTTTTGGATTTGGCATCAA
CGAACACATTGATCTCGGTCTGAAGTACGATCCGACTACTGGTATCTACG
GTATGGATGTTTATGTGGTCCTAAAGCGTGCCGGCGATCGTGTTTCAAAG
CGTCGCCGAGCTCCGAAAAGGATTGGAAAGCTCCAGACCGTCACTAAGGA
CGACGCAATCAAGTGGTTCCAGACGAAACACGAAGGGATCGTTTTGTAA
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protein sequence of Ggra4358.t1

>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MVAGQRNAANPMRELKVHKLVLNICVGESGDRLTRAGRVLEQLTGQQPVY
SKSRLTIRTFGIRRNEKISTHVTIRGPKAEEILERALKVKEYELREANFS
DGGATARAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSK
RRRAPKRIGKLQTVTKDDAIKWFQTKHEGIVL*
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mRNA from alignment at tig00000898_pilon:37226..37774-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000898_pilon:37226..37774- (Gracilaria gracilis GNS1m male)
ATGGTTGCGGGTCAGAGAAATGCTGCGAATCCGATGCGGGAGCTCAAAGT
CCACAAGCTTGTGCTCAACATTTGTGTTGGGGAATCTGGTGATAGGCTGA
CCAGGGCCGGGAGAGTGCTCGAGCAGCTCACCGGCCAACAGCCGGTGTAC
TCCAAGTCAAGGCTGACGATTCGTACTTTCGGAATCCGTCGTAATGAGAA
GATCTCTACCCATGTCACTATTCGTGGACCGAAGGCTGAAGAGATCTTGG
AACGCGCGCTCAAGGTCAAGGAATACGAGCTCCGTGAAGCTAACTTCAGC
GATGGTGGTGCTACTGCTCGTGCGGCTGGTGGTTTTGGATTTGGCATCAA
CGAACACATTGATCTCGGTCTGAAGTACGATCCGACTACTGGTATCTACG
GTATGGATGTTTATGTGGTCCTAAAGCGTGCCGGCGATCGTGTTTCAAAG
CGTCGCCGAGCTCCGAAAAGGATTGGAAAGCTCCAGACCGTCACTAAGGA
CGACGCAATCAAGTGGTTCCAGACGAAACACGAAGGGATCGTTTTGTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:37226..37774-

>Ggra4358.t1 ID=Ggra4358.t1|Name=Ggra4358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000898_pilon:37226..37774- (Gracilaria gracilis GNS1m male)
ATGGTTGCGGGTCAGAGAAATGCTGCGAATCCGATGCGGGAGCTCAAAGT
CCACAAGCTTGTGCTCAACATTTGTGTTGGGGAATCTGGTGATAGGCTGA
CCAGGGCCGGGAGAGTGCTCGAGCAGCTCACCGGCCAACAGCCGGTGTAC
TCCAAGTCAAGGCTGACGATTCGTACTTTCGGAATCCGTCGTAATGAGAA
GATCTCTACCCATGTCACTATTCGTGGACCGAAGGCTGAAGAGATCTTGG
AACGCGCGCTCAAGGTCAAGGAATACGAGCTCCGTGAAGCTAACTTCAGC
GATGGTGGTGCTACTGCTCGTGCGGCTGGTGGTTTTGGATTTGGCATCAA
CGAACACATTGATCTCGGTCTGAAGTACGATCCGACTACTGGTATCTACG
GTATGGATGTTTATGTGGTCCTAAAGCGTGCCGGCGATCGTGTTTCAAAG
CGTCGCCGAGCTCCGAAAAGGATTGGAAAGCTCCAGACCGTCACTAAGGA
CGACGCAATCAAGTGGTTCCAGACGAAACACGAAGGGATCGTTTTGTAA
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