Ggra4346.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4346.t1
Unique NameGgra4346.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Homology
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A2V3IQY1 (Phycobilisome 39 kDa linker polypeptide, phycocyanin-associated, rod n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQY1_9FLOR)

HSP 1 Score: 376 bits (965), Expect = 4.860e-129
Identity = 194/275 (70.55%), Postives = 221/275 (80.36%), Query Frame = 0
Query:    1 MTHAAFTAPLPLTARPSSFAACQSLSTPTPPRTASTRSTPRMAFSSIDRILTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVR-VGTKIPGGVVFY 274
            MT  AFTA LPLTARPSSFAACQ L+ P      + R++PRMAFSSI+R+LT DPV+  +D  LVI ++YKQVLGNA+LMQSER+ L   ESQF  T  +R+FVR++AKSN Y SRFFEPVSQYRFIELAFKHLLGSAPVSKA+Y  AMAKYH EGYDACIDWFIDSA+YE DFG++IVPYGIYKG Y TNELFNRSV+MR TPSSSDK RST+LQ+CVL+G SPSWL+I+KALP  TE GTGY +     S   N  AP R VG KIPGGVVFY
Sbjct:    1 MTIPAFTASLPLTARPSSFAACQPLTRPQSAPLTARRTSPRMAFSSIERVLTVDPVTANDDTSLVIHAIYKQVLGNAYLMQSEREELTATESQFVFTKDVRQFVRAVAKSNTYRSRFFEPVSQYRFIELAFKHLLGSAPVSKAEYAVAMAKYHQEGYDACIDWFIDSADYETDFGDFIVPYGIYKGIYKTNELFNRSVSMRYTPSSSDKGRSTLLQFCVLSGDSPSWLAISKALPPRTEGGTGYNISSSSASVPSNSNAPPRPVGVKIPGGVVFY 275          
BLAST of Ggra4346.t1 vs. uniprot
Match: R7QHH5 (PBS-linker domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHH5_CHOCR)

HSP 1 Score: 329 bits (843), Expect = 1.710e-110
Identity = 165/244 (67.62%), Postives = 194/244 (79.51%), Query Frame = 0
Query:   33 TASTRSTPR--MAFSSIDRILTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVRVGTKIPGGVVFY 274
            T++ R TP   MAFSSID +LT  P SMP D   VIS+V+ QVLGNA+LM+SER  LA  E+ FC TG++R FV +IAKS+AY SRFF PVSQYRFIELAFKHLL  AP SK +Y AAM  YH++GYDACIDWF+ S EY ++FG++ VPY  YKGC+ TNE FNRSVAMRLTPSSSDK R++MLQY V  G SP+WLSIAKALP GTEKGTG+ +GG +TSTQ N  +PVR+GTKIPGGVVFY
Sbjct:   33 TSAARRTPAITMAFSSIDGVLTPAPTSMPSDKADVISAVFNQVLGNAYLMESERAELAAPEATFCQTGNVRAFVAAIAKSHAYSSRFFNPVSQYRFIELAFKHLLARAPSSKNEYAAAMNVYHSKGYDACIDWFVQSDEYHENFGDFTVPYQYYKGCWRTNETFNRSVAMRLTPSSSDKARNSMLQYPVCAGSSPNWLSIAKALPPGTEKGTGFTIGGHWTSTQRNTRSPVRIGTKIPGGVVFY 276          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A291FEB0 (LR2 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEB0_GRIPA)

HSP 1 Score: 309 bits (791), Expect = 1.350e-102
Identity = 151/234 (64.53%), Postives = 181/234 (77.35%), Query Frame = 0
Query:   39 TPRMAFSSIDRILTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVRVGTKIPGGVV 272
            T  MAFSSIDRILTADPV+ P     VI + Y QV GNAH+M SER+ LATAES  C TG++REFVR+I  S  Y SRFF  VSQYRFIEL FKH+LG AP S+A+Y  AMA Y+ +GY+  + WF+DS EY ++FG +IVPYGIY+GCY +NELFNRSVAMRL P  SDK RS MLQYCVL+G SP+WLSI+KALP GTEKGTG  +GG + S+Q N+ APV+  +KIPGGV+
Sbjct:   39 TTSMAFSSIDRILTADPVAFPNGTESVIRATYIQVFGNAHVMDSEREELATAESNVCRTGNVREFVRAIVLSENYKSRFFYSVSQYRFIELMFKHILGRAPESRAEYAEAMAVYNTKGYEPLVSWFVDSLEYNENFGSWIVPYGIYQGCYSSNELFNRSVAMRLAPGCSDKGRSAMLQYCVLSGDSPNWLSISKALPAGTEKGTGLCIGGHWQSSQRNKQAPVKGKSKIPGGVI 272          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A1X6NTF5 (PBS-linker domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTF5_PORUM)

HSP 1 Score: 245 bits (625), Expect = 5.510e-78
Identity = 135/236 (57.20%), Postives = 166/236 (70.34%), Query Frame = 0
Query:   42 MAFSSIDRILTADPVSMPE-DVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDA-CIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERSTM--LQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVRVGTKIPGGVVF 273
            MAFSSI  +LT  PVS+PE  V   I++VYKQVLGNAHLM+SER  LATAESQF LT  +R FVR++  S+A+ SRFF+  S  RF ELAFKH LG  P  +A++ AAMA YH+ G  A  +DW ++S EY + FG+  VPY ++KG Y TNE FNR + +R   SSSDK    +  L   V  G SP+WLSI+K LP GTE+GTG+V+  R+TSTQ N  APVRVG KIPGGVVF
Sbjct:    1 MAFSSIQNVLTDAPVSVPEASVADAITAVYKQVLGNAHLMESERAELATAESQFALTTDVRAFVRAVGVSSAHTSRFFDSGSLVRFTELAFKHFLGRGPRDRAEWAAAMAAYHSGGGVAGVVDWCVNSDEYAEAFGDSTVPYCMFKGAYPTNEEFNRMLVLRGPWSSSDKVAGGVDRLAGAVAGGSSPNWLSISKGLPAGTERGTGFVIASRWTSTQRNPKAPVRVGRKIPGGVVF 236          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A7S0ZF99 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZF99_9RHOD)

HSP 1 Score: 218 bits (556), Expect = 7.180e-67
Identity = 123/249 (49.40%), Postives = 159/249 (63.86%), Query Frame = 0
Query:   43 AFSSIDRILTADPVSM----------------PEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERS--TMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVRVGTKIPGGVVF 273
            AFSSI  +LT  P ++                P+++  VI++VYKQ  GNAH+M+SE++ LA  ES+F ++ S+REFVR++AKSNAY SRF +  SQYRF EL FKHLLG  P S+A+     A Y   G+ A ID  +DS EY  +FG+ +VPY  +KG Y TNE FNR + ++ TPSSSDK     + L Y + TG S +WLS+ K LP GTE+GTG+     Y S   NR A  RVGTKIPGGVVF
Sbjct:   42 AFSSIQGVLTDSPRALVSEMSSNGADGVPKANPQELDEVIAAVYKQTFGNAHIMESEKEELAVFESEFRISRSVREFVRALAKSNAYTSRFLDGNSQYRFFELNFKHLLGRGPRSQAEIATHFAIYAEGGFTAVIDAIVDSEEYSSEFGDVVVPYCRFKGMYPTNEEFNRMLVLKGTPSSSDKASKGRSKLCYSIATGGSQNWLSMTKGLPFGTERGTGFQ--NAYPSR--NRNAKTRVGTKIPGGVVF 286          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A5J4Z7F4 (Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7F4_PORPP)

HSP 1 Score: 205 bits (522), Expect = 1.520e-61
Identity = 122/263 (46.39%), Postives = 155/263 (58.94%), Query Frame = 0
Query:   30 PPRTASTRSTPRMAFSSIDRILTADPVSMPEDVGLV-----------------ISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDK--ERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRYTSTQWNRAAPVRVGTKIPGGVVF 273
            P R AS      MAFSSI  +LT  P+  P  +G +                 + +VYKQV GNAH+M+SER  L  AES F     +REFVR++AKSNAY SRF +   QYRF EL FKHLLG  P S  +  +  A Y   G++A ID  +DS EY  +FG  +VPY  +KG Y TNE FNR + ++   S+SDK  +  + L Y +  G S +WLS++KALP GTEKGTG+       S+  N AA  R+GTKIPGGVVF
Sbjct:   43 PRRAASASQVKMMAFSSIQNVLTDAPLGTPSAMGFLDERTEKPLMGPSEMDELVYAVYKQVFGNAHIMESERAELRDAESLFRYLRDVREFVRALAKSNAYTSRFLQGNQQYRFFELNFKHLLGRGPRSLEEMASHSALYAEGGFEAVIDAILDSDEYAQEFGSTVVPYCRFKGEYPTNEEFNRMLVLKGANSTSDKAGKGRSKLCYSIAAGCSQNWLSMSKALPFGTEKGTGF----NLISSSRNPAARPRIGTKIPGGVVF 301          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A1X6P2M1 (PBS-linker domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2M1_PORUM)

HSP 1 Score: 145 bits (365), Expect = 1.650e-36
Identity = 75/154 (48.70%), Postives = 106/154 (68.83%), Query Frame = 0
Query:   60 EDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMRLTPSSSDKERST 213
            ++  + + +VYK VLGNAHLM+SER  LA +ES F  TG+ +EFVR++A+S+AY +R+FEPV+  RF+EL +K++LG AP S+A+Y   MA    EGY A I+  +DSAEY+  FGE  VP   ++G + TN   NR   +  + SSSDK +ST
Sbjct:  191 DEKAIAVRAVYKNVLGNAHLMESERAELAYSESCFTYTGNAKEFVRAVAQSDAYRTRYFEPVTPMRFVELTYKNILGRAPRSQAEYAGTMAVLQQEGYKAAINSLVDSAEYDSLFGETRVPAVNFRGGHETNNEMNRLAVLSGSASSSDKSKST 344          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A1X6NJ88 (PBS-linker domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJ88_PORUM)

HSP 1 Score: 140 bits (352), Expect = 4.810e-36
Identity = 80/164 (48.78%), Postives = 104/164 (63.41%), Query Frame = 0
Query:   41 RMAFSSIDRILTADPVSMP--EDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLT-GSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAMR 201
            RMAFSS+D+      V +   E + L I +VYKQV GNA+LM+ E   LA AESQF L  GS+REF+R +AKS AY  RF E    YR +EL  KHLLG  PV++A+    +    NEG+DA ID ++DS EY D FG+ +VP  +++G Y  N+ FNR   MR
Sbjct:   38 RMAFSSLDKREEEARVQLEDLEAMDLTIRAVYKQVFGNAYLMEEELAGLAVAESQFRLVHGSVREFIRDLAKSEAYKMRFLETAGPYRVVELNTKHLLGRGPVNQAEVSKHVQTLANEGWDADIDSYLDSDEYTDRFGDDVVPRFVFQGTYARNDDFNRMCVMR 201          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A3M9YVT2 (Photosystem I reaction center subunit XII n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A3M9YVT2_9CYAN)

HSP 1 Score: 135 bits (341), Expect = 3.530e-35
Identity = 84/171 (49.12%), Postives = 106/171 (61.99%), Query Frame = 0
Query:   55 PVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFC-LTGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPY--GIYKGCYMTNELFNRSVAMRLTPSSSDKE-RSTMLQYCVLT 221
            P S  EDV  +I +VYKQVLGN H+M+SER  L  AESQ C  T ++REFVR +AKS+ Y SR+FEP + YRF+EL FKHLLG AP  +A+    + +   +GYDA ID +IDS EY+  FGE  VPY  G          ++NR  A+   PS  D   RS+ L Y V T
Sbjct:    7 PTSSLEDVETIIRAVYKQVLGNPHVMESER--LVAAESQLCNRTITVREFVRIVAKSDFYRSRYFEPCAPYRFVELNFKHLLGRAPQDQAEVSEHIRRCVEQGYDAEIDSYIDSDEYQSAFGENRVPYFRGTVSQPGQKQVVYNRMFALDRGPSQIDSAVRSSQLVYAVAT 175          
BLAST of Ggra4346.t1 vs. uniprot
Match: A0A2T1LXN9 (Photosystem I reaction center subunit XII n=2 Tax=Chroococcales TaxID=1118 RepID=A0A2T1LXN9_9CHRO)

HSP 1 Score: 134 bits (338), Expect = 1.210e-34
Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   47 IDRILTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCL-TGSIREFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMAKYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKG 186
            +DR L     S P++V  VI +VYKQVLGN H+M SER  L TAESQ C  T ++REFVR++AKS+ Y  R+FE  + YRF+EL FKHLLG AP  +A+    +    NEGYDA ID +IDS EY+D+FG+ +VPY  Y+G
Sbjct:    5 LDRPLELRSTSSPDEVAAVIRAVYKQVLGNPHVMDSER--LVTAESQLCNGTLTVREFVRAVAKSDFYRRRYFETCAPYRFVELNFKHLLGRAPQDQAELSKHIQICVNEGYDAEIDSYIDSQEYQDNFGDNVVPY--YRG 141          
The following BLAST results are available for this feature:
BLAST of Ggra4346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQY14.860e-12970.55Phycobilisome 39 kDa linker polypeptide, phycocyan... [more]
R7QHH51.710e-11067.62PBS-linker domain-containing protein n=1 Tax=Chond... [more]
A0A291FEB01.350e-10264.53LR2 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID... [more]
A0A1X6NTF55.510e-7857.20PBS-linker domain-containing protein n=1 Tax=Porph... [more]
A0A7S0ZF997.180e-6749.40Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z7F41.520e-6146.39Phycobilisome 31.8 kDa linker polypeptide, phycoer... [more]
A0A1X6P2M11.650e-3648.70PBS-linker domain-containing protein n=1 Tax=Porph... [more]
A0A1X6NJ884.810e-3648.78PBS-linker domain-containing protein n=1 Tax=Porph... [more]
A0A3M9YVT23.530e-3549.12Photosystem I reaction center subunit XII n=2 Tax=... [more]
A0A2T1LXN91.210e-3453.90Photosystem I reaction center subunit XII n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038255Phycobilisome linker domain superfamilyGENE3D1.10.3130.20Phycobilisome linker domaincoord: 50..189
e-value: 7.7E-36
score: 124.8
IPR001297Phycobilisome linker domainPFAMPF00427PBS_linker_polycoord: 60..181
e-value: 2.5E-35
score: 121.2
IPR001297Phycobilisome linker domainPROSITEPS51445PBS_LINKERcoord: 33..209
score: 22.409821
NoneNo IPR availablePANTHERPTHR34011PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2-RELATEDcoord: 42..216
NoneNo IPR availablePANTHERPTHR34011:SF5PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2coord: 42..216
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..275
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:13237..14064 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1Ggra4346.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 13237..14064 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MTHAAFTAPLPLTARPSSFAACQSLSTPTPPRTASTRSTPRMAFSSIDRI
LTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSI
REFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMA
KYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAM
RLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRY
TSTQWNRAAPVRVGTKIPGGVVFYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038255PBS_linker_sf
IPR001297PBS_linker_dom