Ggra4346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4346.t1
Unique NameGgra4346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:13237..14064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog643473.KB235930_gene2206
Preferred namempeD
PFAMsCpcD,PBS_linker_poly
Max annot lvl1117|Cyanobacteria
KEGG koko:K05378,ko:K05379
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue3.62e-35
EggNOG OGsCOG0237@1|root,COG0237@2|Bacteria,1G01F@1117|Cyanobacteria,1HQP7@1161|Nostocales
DescriptionCpcD/allophycocyanin linker domain
COG categoryH
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4346Ggra4346Gracilaria gracilis GNS1m malegenetig00000898_pilon 13237..14064 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1.stop1Ggra4346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 13237..13239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1.CDS1Ggra4346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 13237..14064 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1.exon1Ggra4346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 13237..14064 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1.start1Ggra4346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 14062..14064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4346.t1Ggra4346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 13237..14064 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MTHAAFTAPLPLTARPSSFAACQSLSTPTPPRTASTRSTPRMAFSSIDRI
LTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSI
REFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMA
KYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAM
RLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRY
TSTQWNRAAPVRVGTKIPGGVVFYG*
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spliced messenger RNA

>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000898_pilon:13237..14064- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACGCCGCCTTTACGGCCCCATTGCCCCTTACGGCACGACCCTC
TTCGTTTGCAGCATGCCAAAGCCTCTCTACTCCCACTCCACCGCGTACCG
CTTCCACGCGCAGTACCCCCCGCATGGCATTTTCTTCTATTGACCGTATT
CTCACCGCAGACCCTGTATCCATGCCCGAGGATGTAGGTTTAGTCATATC
TTCTGTCTACAAGCAAGTGCTCGGTAATGCCCACTTAATGCAATCGGAGC
GTGATGCGTTGGCCACTGCTGAGAGCCAATTTTGTCTCACTGGAAGTATT
CGCGAATTCGTGCGTTCCATTGCCAAGTCCAATGCTTATGTATCGCGCTT
TTTTGAACCCGTCTCTCAGTATCGCTTTATTGAGCTAGCTTTCAAGCATC
TGCTGGGAAGTGCACCCGTTTCCAAAGCCCAATACTGCGCAGCAATGGCC
AAGTATCATAACGAAGGTTACGATGCATGTATTGATTGGTTCATTGACTC
AGCGGAATACGAGGACGATTTTGGAGAGTATATTGTGCCATATGGCATTT
ACAAGGGATGCTATATGACCAACGAGCTTTTCAACAGGAGTGTGGCTATG
CGTTTAACCCCCAGCTCTAGTGATAAGGAACGTTCAACAATGCTGCAGTA
CTGCGTATTGACTGGACAGAGTCCCAGCTGGCTCAGCATTGCAAAGGCGT
TGCCTCTAGGAACTGAGAAAGGTACTGGATATGTTGTTGGAGGTCGTTAC
ACCTCTACGCAATGGAACAGGGCTGCCCCCGTACGGGTAGGTACCAAGAT
CCCAGGAGGAGTCGTCTTCTACGGCTGA
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protein sequence of Ggra4346.t1

>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MTHAAFTAPLPLTARPSSFAACQSLSTPTPPRTASTRSTPRMAFSSIDRI
LTADPVSMPEDVGLVISSVYKQVLGNAHLMQSERDALATAESQFCLTGSI
REFVRSIAKSNAYVSRFFEPVSQYRFIELAFKHLLGSAPVSKAQYCAAMA
KYHNEGYDACIDWFIDSAEYEDDFGEYIVPYGIYKGCYMTNELFNRSVAM
RLTPSSSDKERSTMLQYCVLTGQSPSWLSIAKALPLGTEKGTGYVVGGRY
TSTQWNRAAPVRVGTKIPGGVVFYG*
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mRNA from alignment at tig00000898_pilon:13237..14064-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000898_pilon:13237..14064- (Gracilaria gracilis GNS1m male)
ATGACGCACGCCGCCTTTACGGCCCCATTGCCCCTTACGGCACGACCCTC
TTCGTTTGCAGCATGCCAAAGCCTCTCTACTCCCACTCCACCGCGTACCG
CTTCCACGCGCAGTACCCCCCGCATGGCATTTTCTTCTATTGACCGTATT
CTCACCGCAGACCCTGTATCCATGCCCGAGGATGTAGGTTTAGTCATATC
TTCTGTCTACAAGCAAGTGCTCGGTAATGCCCACTTAATGCAATCGGAGC
GTGATGCGTTGGCCACTGCTGAGAGCCAATTTTGTCTCACTGGAAGTATT
CGCGAATTCGTGCGTTCCATTGCCAAGTCCAATGCTTATGTATCGCGCTT
TTTTGAACCCGTCTCTCAGTATCGCTTTATTGAGCTAGCTTTCAAGCATC
TGCTGGGAAGTGCACCCGTTTCCAAAGCCCAATACTGCGCAGCAATGGCC
AAGTATCATAACGAAGGTTACGATGCATGTATTGATTGGTTCATTGACTC
AGCGGAATACGAGGACGATTTTGGAGAGTATATTGTGCCATATGGCATTT
ACAAGGGATGCTATATGACCAACGAGCTTTTCAACAGGAGTGTGGCTATG
CGTTTAACCCCCAGCTCTAGTGATAAGGAACGTTCAACAATGCTGCAGTA
CTGCGTATTGACTGGACAGAGTCCCAGCTGGCTCAGCATTGCAAAGGCGT
TGCCTCTAGGAACTGAGAAAGGTACTGGATATGTTGTTGGAGGTCGTTAC
ACCTCTACGCAATGGAACAGGGCTGCCCCCGTACGGGTAGGTACCAAGAT
CCCAGGAGGAGTCGTCTTCTACGGCTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:13237..14064-

>Ggra4346.t1 ID=Ggra4346.t1|Name=Ggra4346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000898_pilon:13237..14064- (Gracilaria gracilis GNS1m male)
ATGACGCACGCCGCCTTTACGGCCCCATTGCCCCTTACGGCACGACCCTC
TTCGTTTGCAGCATGCCAAAGCCTCTCTACTCCCACTCCACCGCGTACCG
CTTCCACGCGCAGTACCCCCCGCATGGCATTTTCTTCTATTGACCGTATT
CTCACCGCAGACCCTGTATCCATGCCCGAGGATGTAGGTTTAGTCATATC
TTCTGTCTACAAGCAAGTGCTCGGTAATGCCCACTTAATGCAATCGGAGC
GTGATGCGTTGGCCACTGCTGAGAGCCAATTTTGTCTCACTGGAAGTATT
CGCGAATTCGTGCGTTCCATTGCCAAGTCCAATGCTTATGTATCGCGCTT
TTTTGAACCCGTCTCTCAGTATCGCTTTATTGAGCTAGCTTTCAAGCATC
TGCTGGGAAGTGCACCCGTTTCCAAAGCCCAATACTGCGCAGCAATGGCC
AAGTATCATAACGAAGGTTACGATGCATGTATTGATTGGTTCATTGACTC
AGCGGAATACGAGGACGATTTTGGAGAGTATATTGTGCCATATGGCATTT
ACAAGGGATGCTATATGACCAACGAGCTTTTCAACAGGAGTGTGGCTATG
CGTTTAACCCCCAGCTCTAGTGATAAGGAACGTTCAACAATGCTGCAGTA
CTGCGTATTGACTGGACAGAGTCCCAGCTGGCTCAGCATTGCAAAGGCGT
TGCCTCTAGGAACTGAGAAAGGTACTGGATATGTTGTTGGAGGTCGTTAC
ACCTCTACGCAATGGAACAGGGCTGCCCCCGTACGGGTAGGTACCAAGAT
CCCAGGAGGAGTCGTCTTCTACGGCTGA
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