Ggra4342.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4342.t1
Unique NameGgra4342.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length569
Homology
BLAST of Ggra4342.t1 vs. uniprot
Match: R7QN93 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN93_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 1.850e-16
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:  404 SCYAQPLT---------PKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKK--QAAHSLSDP 482
            + YAQP T         PKK+RLQWTP+LH+KF  AV + G++ AVPK LL+A+N P LTRENVASHLQK+RE +RK+K  +   S+S P
Sbjct:  578 NVYAQPATVHYITPPPAPKKKRLQWTPELHAKFEDAVNEIGLEAAVPKTLLQAINEPTLTRENVASHLQKFREMIRKRKLEEQKQSVSGP 667          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A090MAV9 (Myb domain, plants n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MAV9_OSTTA)

HSP 1 Score: 87.4 bits (215), Expect = 4.270e-16
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query:  404 SCYAQPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKKQAAHS 478
             C A     K+ RL WTP LH++FV AVE+ G+D AVPK +++ MNV GLTRENVASHLQKYR  L++KK ++ S
Sbjct:   63 GCVATGELRKRARLVWTPALHAQFVAAVEKLGVDAAVPKSIMKIMNVEGLTRENVASHLQKYRINLKRKKFSSES 137          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A392NQV9 (Two-component response regulator ARR2-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NQV9_9FABA)

HSP 1 Score: 84.3 bits (207), Expect = 3.240e-15
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 0
Query:  408 QPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYRE----GLRKKKQAAHSL---SDPVHT 485
            QPL PKK RL WTPDLH +F+ AV Q G+++AVPK +L+ MN PGLT  +VASHLQKYR+    G+RK K +  S     D +HT
Sbjct:   76 QPL-PKKSRLSWTPDLHGQFMSAVNQLGVNNAVPKEILKRMNFPGLTLGHVASHLQKYRKYLKGGIRKSKLSGGSDFQGHDEMHT 159          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A2U1LYS4 (CheY-like superfamily, Signal transduction response regulator, PEP-CTERM system n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LYS4_ARTAN)

HSP 1 Score: 87.4 bits (215), Expect = 8.340e-15
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:  412 PKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRK 471
            PKK R+ WTP+LH KFV+AV   GI +AVPK LL  MNVPGL RE+VASHLQKYR  LRK
Sbjct:  213 PKKNRIAWTPELHEKFVRAVTILGIQNAVPKKLLELMNVPGLRRESVASHLQKYRLNLRK 272          
BLAST of Ggra4342.t1 vs. uniprot
Match: two-component response regulator ORR21-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8E6E2 (two-component response regulator ORR21-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8E6E2)

HSP 1 Score: 85.9 bits (211), Expect = 1.140e-14
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query:  413 KKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKKQAAHSLSDPVHTNYAA 489
            KK+R+ WT +LH  FV+AV+Q GID+AVPK +L  MNVPGL RENVASHLQKYR  L+K K+         H++ AA
Sbjct:  197 KKQRMVWTDELHLLFVRAVKQLGIDNAVPKKVLELMNVPGLRRENVASHLQKYRLSLKKLKEHMPESFSVPHSSPAA 273          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A2N9II98 (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9II98_FAGSY)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-14
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
Query:  411 TPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKK 473
            T KK RL WTP LH KF+ A+++ G D+AVP  +L+ MNVPGLTRENVASHLQKYR  L+K+K
Sbjct:  173 TRKKSRLSWTPQLHLKFLNAIQELGDDEAVPNNILKIMNVPGLTRENVASHLQKYRNILKKQK 235          
BLAST of Ggra4342.t1 vs. uniprot
Match: two-component response regulator ARR14-like n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI0008099D35 (two-component response regulator ARR14-like n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI0008099D35)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-14
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 0
Query:  413 KKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKKQAAHSLSDPVHTNYAAE 490
            KK R+ WT +LH KFVKAV Q G+ +AVPK L+  MN+PGLTR +V SHLQKYR  L++K Q + +   P+H +  AE
Sbjct:  139 KKSRIIWTSELHGKFVKAVNQIGLANAVPKKLVELMNIPGLTRNHVGSHLQKYRNTLKRKPQQS-ATDIPLHNHLHAE 215          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A8B8M5I3 (two-component response regulator ORR21-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8M5I3_ABRPR)

HSP 1 Score: 85.9 bits (211), Expect = 1.690e-14
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0
Query:  404 SCYAQPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRK 471
            SCY  P   KK RL W+ +LH +FVKAV Q G++ AVP+ +L  MNVPGLTRENVASHLQKYR  L+K
Sbjct:  159 SCYQPPT--KKPRLTWSRELHLEFVKAVMQLGLNKAVPRKILEVMNVPGLTRENVASHLQKYRLNLKK 224          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A8B8MJ70 (Two-component response regulator n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MJ70_ABRPR)

HSP 1 Score: 87.8 bits (216), Expect = 1.710e-14
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  408 QPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRKKKQAAHSL-----SDP 482
            +PL  KK RL W  +LHSKFV AV Q GID A PK +L  MNV GLTRENVASHLQKYR  L+K  Q A+ +     SDP
Sbjct:  202 EPLNQKKPRLVWAAELHSKFVAAVNQLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLSLKKPTQQANMVVALGSSDP 281          
BLAST of Ggra4342.t1 vs. uniprot
Match: A0A5P1EWV3 (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWV3_ASPOF)

HSP 1 Score: 87.0 bits (214), Expect = 1.770e-14
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0
Query:  411 TPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNVPGLTRENVASHLQKYREGLRK 471
            T KK R+ WT DLHSKF+ A+ + G+D AVPK +L  MN PGLTRENVASHLQKYR+ L+K
Sbjct:  142 TQKKPRVAWTSDLHSKFIDAINKLGLDRAVPKKILDLMNTPGLTRENVASHLQKYRKALKK 202          
The following BLAST results are available for this feature:
BLAST of Ggra4342.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QN931.850e-1655.56Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A090MAV94.270e-1657.33Myb domain, plants n=2 Tax=Ostreococcus tauri TaxI... [more]
A0A392NQV93.240e-1555.29Two-component response regulator ARR2-like (Fragme... [more]
A0A2U1LYS48.340e-1570.00CheY-like superfamily, Signal transduction respons... [more]
two-component response regulator ORR21-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8E6E21.140e-1457.14two-component response regulator ORR21-like n=1 Ta... [more]
A0A2N9II981.170e-1465.08Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
two-component response regulator ARR14-like n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI0008099D351.240e-1453.85two-component response regulator ARR14-like n=1 Ta... [more]
A0A8B8M5I31.690e-1463.24two-component response regulator ORR21-like n=1 Ta... [more]
A0A8B8MJ701.710e-1460.00Two-component response regulator n=1 Tax=Abrus pre... [more]
A0A5P1EWV31.770e-1465.57Uncharacterized protein n=2 Tax=Asparagus officina... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 411..472
e-value: 2.3E-27
score: 96.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..536
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 493..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 493..536
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..388
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 417..466
e-value: 4.9E-7
score: 29.9
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 411..470
score: 13.386958
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 414..467
e-value: 4.4E-22
score: 76.1
IPR044841Transcription factor LUX/BOA-likePANTHERPTHR31442HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 412..511
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 411..471

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:7819..9525 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4342.t1Ggra4342.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 7819..9525 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4342.t1 ID=Ggra4342.t1|Name=Ggra4342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=569bp
MCTTAIHSARNPPPRACAAEDKATSHQQRQAASPIHGAAFIVVTLPQTPV
RLHALPFRLHYNRVSPFVARRLPRRHATFVRPDVVSRRSSPFCRIVRRSS
PRSARRMSFQTLAPPRRLRALEPSQRVLAANLPRVPAAAPSVPSSFTHAS
SQPLPSPYALAQSVNRTRAPLLCPTPSNASPGLHHASPHPAAHDAHATVL
DHAVGTQAQPLQYHVPHSSHQVSAPCVTPPHTMSPATPHMQYGMVADTAP
SGTPIPNASTATCTYAPVPTSPAAWSGAPVPPSSIAPQVLPQPQYMPYMR
SAPPSTAYYMYPPVPSQYVPHPAYYAPNYAMSTYATVPQHQQQSVHGTVA
EPQPPHPVATPTISPSQLPIPQSHPAVASQQQQQQQQQQPLMAFPLYVNM
PQYSCYAQPLTPKKRRLQWTPDLHSKFVKAVEQYGIDDAVPKLLLRAMNV
PGLTRENVASHLQKYREGLRKKKQAAHSLSDPVHTNYAAERNGVRREAEH
VDEGLEESRKLDDVSASSSQGVNCESSELSSSEQNSCIRTEGGVHGAEGR
LCLSEQALKKRRLSESPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR044841LUX/BOA-like
IPR009057Homeobox-like_sf